[Home] | [Total List]

[175256_at]

Description AV182861_rc /REP_DB=TREMBL Accession /GB=AV182861 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk643e7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 49      4grp_highest_8_8 > 50      4grp_high_8_8 > 32      6grp_highest_nonorm > 74      6grp_total > 39      4grp_total > 47      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 553
1 2 3 4 range
A 700.1
(3)
P 		392.5
(-1.4)
P 		440
(-0.7)
P 		276.2
(-3)
P 		424
B 829.3
(3)
P 		435
(-2)
P 		356
(-3)
P 		508.7
(-1.1)
P 		473
C 643.4
(3)
P 		418
(-1.8)
P 		429
(-1.5)
P 		359.7
(-3)
P 		284
avr 724.3
(3) 		415.2
(-2.4) 		408.3
(-2.5) 		381.5
(-3) 		343

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 507
1 2 3 4 5 6 range
A 806
(1.5)
P 		575.2
(-1.3)
P 		436.5
(-3)
P 		622
(-0.8)
P 		933.1
(3)
P 		611.7
(-0.9)
P 		497
B 775.5
(2.8)
P 		702.6
(1.5)
P 		462
(-3)
P 		642.4
(0.4)
P 		784.6
(3)
P 		665.3
(0.8)
P 		323
C 735.2
(2.3)
P 		734.7
(2.2)
P 		426.5
(-3)
P 		680.8
(1.3)
P 		606
(0.1)
P 		779
(3)
P 		353
avr 772.2
(3) 		670.8
(1.1) 		441.7
(-3) 		648.4
(0.7) 		774.6
(3) 		685.3
(1.4) 		333
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 224
1 2 3 4 range
A 254.9
(3)
P 		85.2
(-1.7)
P 		115
(-0.9)
P 		40.4
(-3)
P 		215
B 264.4
(3)
P 		107.4
(-2.2)
P 		82.5
(-3)
P 		108.4
(-2.1)
P 		182
C 213
(3)
P 		120.2
(-0.7)
P 		149.5
(0.5)
P 		60.6
(-3)
P 		152
avr 244.1
(3) 		104.3
(-1.8) 		115.7
(-1.4) 		69.8
(-3) 		174

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 148.6
(-1.3)
P 		204.6
(0.5)
P 		95.1
(-3)
P 		157.7
(-1)
P 		281.6
(3)
P 		148.9
(-1.3)
P 		187
B 269.8
(1.6)
P 		233.9
(0.5)
P 		112.2
(-3)
P 		170.2
(-1.3)
P 		318.8
(3)
P 		248.1
(0.9)
P 		207
C 272.5
(3)
P 		224.2
(1.2)
P 		108.5
(-3)
P 		136.9
(-2)
P 		196.1
(0.2)
P 		260.8
(2.6)
P 		164
avr 230.3
(1.7) 		220.9
(1.3) 		105.3
(-3) 		154.9
(-1.1) 		265.5
(3) 		219.3
(1.3) 		160
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175256_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22104
Sequence Type Exemplar sequence
Representative Public ID AV182861 NCBI
Target Description AV182861_rc /REP_DB=TREMBL Accession /GB=AV182861 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk643e7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076384(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076384 NCBI Caenorhabditis elegans C05E11.3 (C05E11.3) mRNA, complete cds. 11/11 A 
C05E11.3 ENSEMBL cdna:known chromosome:CEL140:X:4579477:4581627:1 gene:C05E11.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4581338-4581618(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05E11.3
Entrez Gene 180730 Entrez gene
SwissProt Q17664 EMBL-EBI
WormBase CE33029 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96192 Hypothetical protein C05E11.3 [Caenorhabditis elegans] ref|NP_508785.2| C05E11.3 [Caenorhabditis elegans] gb|AAK69599.1| lysosomal-associated transmembrane protein [Caenorhabditis elegans] 1.0E-132
blast CAE68615 Hypothetical protein CBG14497 [Caenorhabditis briggsae] 1.0E-130
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508785.2 4 52-74,94-116,128-150,184-206
C05E11.3 4 52-74,94-116,128-150,184-206
Sequence
Target Sequence 
>C. ELEGANS:175256_AT
aagtgtgtcattttcacccaaggttttactgagcatttatttttttttacttcaccactt
tacctctatctttgactactttcacttgctcagcttcttctcgaacctgttctttcactt
ttcaacacaattgaattttatctactctttctgaggttgtgacaatgtacatagactatt
cttttccgatctttttatttcaactttttttttatcataacaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGTGTCATTTTCACCCAAGGTT 527 159 39 Antisense
CACCCAAGGTTTTACTGAGCATTTA 419 199 53 Antisense
CACTTTACCTCTATCTTTGACTACT 313 195 94 Antisense
TCTTTGACTACTTTCACTTGCTCAG 569 615 107 Antisense
ACCTGTTCTTTCACTTTTCAACACA 150 87 143 Antisense
CACAATTGAATTTTATCTACTCTTT 98 195 164 Antisense
TATCTACTCTTTCTGAGGTTGTGAC 656 659 177 Antisense
GAGGTTGTGACAATGTACATAGACT 208 403 191 Antisense
GTACATAGACTATTCTTTTCCGATC 489 459 205 Antisense
GACTATTCTTTTCCGATCTTTTTAT 207 373 212 Antisense
TCAACTTTTTTTTTATCATAACACA 50 631 238 Antisense
Sequence Source Affymetrix Proprietary Database