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[175253_s_at]

Description AV180727_rc /REP_DB=TREMBL Accession /GB=AV180727 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk611d1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 17      4grp_highest_8_8 > 50      4grp_high_8_8 > 33      6grp_highest_nonorm > 40      6grp_total > 06      4grp_total > 47      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 738
1 2 3 4 range
A 942.9
(3)
P 		372.7
(-2.5)
P 		320
(-3)
P 		355.2
(-2.7)
P 		623
B 1028.9
(3)
P 		359.6
(-2.6)
P 		385.4
(-2.4)
P 		313.9
(-3)
P 		715
C 926.3
(3)
P 		459.5
(-1.4)
P 		290.8
(-3)
P 		295.1
(-3)
P 		636
avr 966
(3) 		397.3
(-2.3) 		332.1
(-2.9) 		321.4
(-3) 		645

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1104
1 2 3 4 5 6 range
A 1311.2
(3)
P 		630
(-0.7)
P 		317.4
(-2.4)
P 		243.9
(-2.8)
P 		296
(-2.5)
P 		207.5
(-3)
P 		1104
B 1216.2
(3)
P 		678
(-0.4)
P 		311.3
(-2.6)
P 		311.7
(-2.6)
P 		339.6
(-2.5)
P 		253
(-3)
P 		963
C 973.4
(3)
P 		649.7
(0.3)
P 		348.4
(-2.3)
P 		286.6
(-2.8)
P 		333.3
(-2.4)
P 		262.5
(-3)
P 		711
avr 1166.9
(3) 		652.6
(-0.3) 		325.7
(-2.5) 		280.7
(-2.7) 		323
(-2.5) 		241
(-3) 		926
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 294
1 2 3 4 range
A 343.3
(3)
P 		80.9
(-2.4)
P 		83.7
(-2.3)
P 		52
(-3)
P 		291
B 328.1
(3)
P 		88.8
(-2.5)
P 		89.3
(-2.5)
P 		66.9
(-3)
P 		261
C 306.6
(3)
P 		132.1
(-1.1)
P 		101.3
(-1.8)
P 		49.8
(-3)
P 		257
avr 326
(3) 		100.6
(-2) 		91.4
(-2.2) 		56.2
(-3) 		270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 373
1 2 3 4 5 6 range
A 241.7
(3)
P 		224.1
(2.4)
P 		69.1
(-2.4)
P 		61.9
(-2.6)
P 		89.3
(-1.8)
P 		50.5
(-3)
P 		191
B 423.2
(3)
P 		225.7
(-0.4)
P 		75.6
(-3)
P 		82.6
(-2.9)
P 		138
(-1.9)
P 		94.4
(-2.7)
P 		348
C 360.8
(3)
P 		198.2
(-0.2)
P 		88.7
(-2.4)
P 		57.6
(-3)
P 		107.8
(-2)
P 		87.9
(-2.4)
P 		303
avr 341.9
(3) 		216
(0.2) 		77.8
(-2.8) 		67.4
(-3) 		111.7
(-2) 		77.6
(-2.8) 		275
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175253_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21979
Sequence Type Exemplar sequence
Representative Public ID AV180727 NCBI
Target Description AV180727_rc /REP_DB=TREMBL Accession /GB=AV180727 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk611d1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071256(11), NM_071282(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071256 NCBI Caenorhabditis elegans Y19D10A.4 (Y19D10A.4) mRNA, complete cds. 11/11 A 
NM_071282 NCBI Caenorhabditis elegans C01B4.7 (C01B4.7) mRNA, complete cds. 11/11 A 
Y19D10A.4 ENSEMBL cdna:known chromosome:CEL140:V:2385784:2393975:1 gene:Y19D10A.4 11/11 A 
C01B4.7 ENSEMBL cdna:known chromosome:CEL140:V:2494063:2498829:1 gene:C01B4.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000008437 6/11 Cross Hyb Matching Probes None
GENEFINDER00000029978 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2497558-2498871(+) 100.0 100.0
chrV:2389279-2390592(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl Y19D10A.4
C01B4.7
Entrez Gene 178718 Entrez gene
178722 Entrez gene
SwissProt Q9UAT5 EMBL-EBI
Q966D4 EMBL-EBI
WormBase CE20476 Wormbase
CE21450 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1636453_AT dm
DROSGENOME1:146248_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6012 galactose metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4034 aldose 1-epimerase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503657 Y19D10A.4 [Caenorhabditis elegans] gb|AAK68417.1| Hypothetical protein Y19D10A.4 [Caenorhabditis elegans] 0.0
blast AAD14699 Hypothetical protein C01B4.7 [Caenorhabditis elegans] ref|NP_503683.1| C01B4.7 [Caenorhabditis elegans] 0.0
blast CAE58098 Hypothetical protein CBG01182 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008183 EMBL-EBI Aldose 1-epimerase 2.0E-113
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503657.1 12 39-61,92-114,119-141,151-173,180-202,212-231,272-294,309-328,341-363,367-389,402-424,434-456
NP_503683.1 12 39-61,92-114,119-141,151-173,180-202,212-231,272-294,309-328,341-363,367-389,402-424,434-456
Y19D10A.4 12 39-61,92-114,119-141,151-173,180-202,212-231,272-294,309-328,341-363,367-389,402-424,434-456
C01B4.7 12 39-61,92-114,119-141,151-173,180-202,212-231,272-294,309-328,341-363,367-389,402-424,434-456
Sequence
Target Sequence 
>C. ELEGANS:175253_S_AT
agcattgtcactttgctgtcagtgcgatctccttcctgtcgtactgtgttcagttcatct
cgccgttaggagtcggcattttgtgtccggataatacgccagatcagtggtcacgcctgt
tcatcatcatcacccttatcatgattatcaccaacgctccattcccatggttgaccactc
aacaagccgctaattat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCATTGTCACTTTGCTGTCAGTGC 285 79 15 Antisense
TCACTTTGCTGTCAGTGCGATCTCC 229 625 22 Antisense
TTCCTGTCGTACTGTGTTCAGTTCA 538 695 47 Antisense
CAGTTCATCTCGCCGTTAGGAGTCG 496 205 65 Antisense
AGGAGTCGGCATTTTGTGTCCGGAT 83 57 82 Antisense
GTGTCCGGATAATACGCCAGATCAG 451 485 97 Antisense
AATACGCCAGATCAGTGGTCACGCC 251 173 107 Antisense
TTCATCATCATCACCCTTATCATGA 272 689 134 Antisense
TCATGATTATCACCAACGCTCCATT 569 621 153 Antisense
TCCATTCCCATGGTTGACCACTCAA 457 591 172 Antisense
GACCACTCAACAAGCCGCTAATTAT 484 383 187 Antisense
Sequence Source Affymetrix Proprietary Database