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[175252_at] kruppel-like zinc-finger protein

Description AU114875_rc /REP_DB=TREMBL Accession /GB=AU114875 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk722g7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 78      6grp_total > 77      4grp_total > 04      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1943
1 2 3 4 range
A 1131.5
(-1.3)
P 		810.6
(-2.7)
P 		752.9
(-3)
P 		2059.9
(3)
P 		1307
B 1036.3
(-2)
P 		820.1
(-2.7)
P 		720.1
(-3)
P 		2662.6
(3)
P 		1943
C 1092.2
(-2)
P 		831
(-3)
P 		823.9
(-3)
P 		2382.5
(3)
P 		1559
avr 1086.7
(-1.8) 		820.6
(-2.8) 		765.6
(-3) 		2368.3
(3) 		1603

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1595
1 2 3 4 5 6 range
A 1438.5
(-1)
P 		1143.8
(-2.9)
P 		1230.5
(-2.4)
P 		1132.4
(-3)
P 		1919.4
(2.1)
P 		2065.8
(3)
P 		933
B 1301.8
(-2.5)
P 		1186.1
(-3)
P 		1243.8
(-2.7)
P 		1462.9
(-1.7)
P 		1486.4
(-1.6)
P 		2499.4
(3)
P 		1313
C 1180.1
(-2.6)
P 		1281.4
(-2.2)
P 		1081.2
(-3)
P 		1900.9
(0.1)
P 		1145
(-2.8)
P 		2676.4
(3)
P 		1595
avr 1306.8
(-2.4) 		1203.8
(-2.9) 		1185.2
(-3) 		1498.7
(-1.5) 		1516.9
(-1.4) 		2413.9
(3) 		1229
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 401
1 2 3 4 range
A 412
(3)
P 		176
(-3)
P 		196.8
(-2.5)
P 		301.5
(0.2)
P 		236
B 330.5
(-0.5)
P 		202.5
(-2.5)
P 		166.9
(-3)
P 		567.4
(3)
P 		401
C 361.6
(1.5)
P 		238.9
(-3)
P 		287.1
(-1.2)
P 		401.7
(3)
P 		163
avr 368
(1.5) 		205.8
(-3) 		216.9
(-2.7) 		423.5
(3) 		218

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 667
1 2 3 4 5 6 range
A 265.2
(-3)
P 		406.8
(-0.3)
P 		268
(-2.9)
P 		287.2
(-2.6)
P 		579.2
(3)
P 		503
(1.5)
P 		314
B 453
(-1.6)
P 		394.8
(-2.1)
P 		302
(-3)
P 		387.5
(-2.2)
P 		603.9
(-0.1)
P 		932
(3)
P 		630
C 437.4
(-1.4)
P 		391
(-1.9)
P 		275.2
(-3)
P 		382.3
(-2)
P 		370.5
(-2.1)
P 		895.9
(3)
P 		621
avr 385.2
(-1.7) 		397.5
(-1.6) 		281.7
(-3) 		352.3
(-2.1) 		517.9
(-0.1) 		777
(3) 		495
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175252_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20130
Sequence Type Exemplar sequence
Representative Public ID AU114875 NCBI
Target Description AU114875_rc /REP_DB=TREMBL Accession /GB=AU114875 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk722g7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060048(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060048 NCBI Caenorhabditis elegans Maternal Effect Lethal family member (mel-26) (mel-26) mRNA, complete cds. 11/11 None
ZK858.4 ENSEMBL cdna:known chromosome:CEL140:I:9140662:9143860:1 gene:ZK858.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9143424-9143731(+) 100.0 100.0
Public Domain and Genome References
Gene Title kruppel-like zinc-finger protein
Gene Symbol mel-26
Ensembl ZK858.4
Entrez Gene 172737 Entrez gene
SwissProt Q94420 EMBL-EBI
WormBase CE30580 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02139 Hypothetical protein ZK858.4 [Caenorhabditis elegans] ref|NP_492449.2| Maternal Effect Lethal family member (mel-26) [Caenorhabditis elegans] gb|AAC63596.1| MEL-26 [Caenorhabditis elegans] 0.0
blast CAE67044 Hypothetical protein CBG12451 [Caenorhabditis briggsae] 0.0
blast XP_395294 PREDICTED: similar to ENSANGP00000024127 [Apis mellifera] 8.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 4.4E-11
Pfam IPR000210 EMBL-EBI BTB/POZ domain 7.5E-30
Sequence
Target Sequence 
>C. ELEGANS:175252_AT
aaaccaacgtactgaacttctatcgttccactacagtagtccgggtatcttgattttgtt
gctctctcttttctctgtctcttatttcaataattcatcaaaacttcattgctagatttc
acaatccacatgtaattaactaccatcccccattagctcctgacattcttgtctgtataa
cgttgagctttatctatgtcatcatattttgtaaattttgcacacattctgtcattactt
ctttcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACCAACGTACTGAACTTCTATCG 671 93 40 Antisense
AACTTCTATCGTTCCACTACAGTAG 211 139 54 Antisense
ACTACAGTAGTCCGGGTATCTTGAT 137 101 69 Antisense
GTATCTTGATTTTGTTGCTCTCTCT 283 455 84 Antisense
TCTTTTCTCTGTCTCTTATTTCAAT 50 617 106 Antisense
ACATGTAATTAACTACCATCCCCCA 206 107 167 Antisense
CCATTAGCTCCTGACATTCTTGTCT 190 271 189 Antisense
CATTCTTGTCTGTATAACGTTGAGC 315 215 203 Antisense
AACGTTGAGCTTTATCTATGTCATC 177 145 218 Antisense
GTAAATTTTGCACACATTCTGTCAT 611 461 250 Antisense
ACATTCTGTCATTACTTCTTTCTTC 355 105 263 Antisense
Sequence Source Affymetrix Proprietary Database