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[175250_at]

Description AV183293_rc /REP_DB=TREMBL Accession /GB=AV183293 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk649c1 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 01      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_total > 32      4grp_total > 31      6grp_high1_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 231.4
(3)
P 		209.6
(1.9)
P 		117
(-3)
P 		158.2
(-0.8)
P 		114
B 217
(2.8)
P 		118.4
(-3)
P 		194.1
(1.4)
P 		220.7
(3)
P 		102
C 190.7
(3)
P 		171.9
(-2.1)
P 		168.5
(-3)
P 		185
(1.5)
P 		22
avr 213
(3) 		166.6
(-2.2) 		159.9
(-3) 		188
(0.2) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 269.2
(3)
P 		162.9
(-1.5)
P 		158.9
(-1.7)
P 		181.7
(-0.7)
M 		128.9
(-3)
P 		151.9
(-2)
P 		140
B 97.3
(-3)
P 		189.6
(3)
P 		155.6
(0.8)
P 		125.9
(-1.1)
P 		156.4
(0.8)
P 		123.2
(-1.3)
P 		92
C 169
(1)
M 		105.5
(-1.7)
P 		216.6
(3)
P 		164.3
(0.8)
P 		136.2
(-0.4)
P 		75.4
(-3)
P 		141
avr 178.5
(3) 		152.7
(0.5) 		177
(2.9) 		157.3
(0.9) 		140.5
(-0.7) 		116.8
(-3) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 84.2
(3)
P 		45.5
(-0.8)
P 		30.6
(-2.3)
P 		23.2
(-3)
P 		61
B 69.2
(3)
P 		29.3
(-3)
P 		45
(-0.6)
P 		47
(-0.3)
P 		40
C 63.1
(3)
P 		49.4
(0.4)
P 		58.7
(2.2)
P 		31.2
(-3)
P 		32
avr 72.2
(3) 		41.4
(-1.8) 		44.8
(-1.3) 		33.8
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 49.6
(0.9)
P 		57.9
(3)
P 		34.6
(-3)
P 		46.1
(-0)
M 		38.9
(-1.9)
P 		37
(-2.4)
P 		23
B 33.8
(-2.9)
P 		63.1
(2.9)
P 		37.8
(-2.1)
P 		33.3
(-3)
P 		63.5
(3)
P 		46
(-0.5)
P 		30
C 62.6
(3)
M 		32.2
(-1.9)
P 		55.1
(1.8)
P 		33
(-1.7)
P 		44.1
(0)
P 		25.2
(-3)
P 		37
avr 48.7
(2) 		51.1
(3) 		42.5
(-0.4) 		37.5
(-2.4) 		48.8
(2.1) 		36.1
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175250_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20202
Sequence Type Exemplar sequence
Representative Public ID AV183293 NCBI
Target Description AV183293_rc /REP_DB=TREMBL Accession /GB=AV183293 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk649c1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061052
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061052 NCBI Caenorhabditis elegans F47G4.4 (F47G4.4) mRNA, complete cds. A 
F47G4.4.1 ENSEMBL cdna:known chromosome:CEL140:I:14070867:14076927:-1 gene:F47G4.4 None
F47G4.4.2 ENSEMBL cdna:known chromosome:CEL140:I:14070873:14076921:-1 gene:F47G4.4 None
SNAP00000012293 ENSEMBL cdna:SNAP chromosome:CEL140:I:14071007:14074814:-1 None
GENEFINDER00000012298 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14071007:14076337:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14070866-14071146(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47G4.4
Entrez Gene 173271 Entrez gene
SwissProt Q9XTS1 EMBL-EBI
WormBase CE18702 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16313 Hypothetical protein F47G4.4 [Caenorhabditis elegans] ref|NP_493453.1| F47G4.4 [Caenorhabditis elegans] 0.0
blast CAE71828 Hypothetical protein CBG18869 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 9.7E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.13
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 9.7E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.13
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 9.7E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.13
Sequence
Target Sequence 
>C. ELEGANS:175250_AT
aaggcatgtgttcaggtaggcatcttgtaggggttttgcccttattaaccctacaaataa
ttccagcacctccgctccctggtcaaaaaacgcgactggtactacaaacaactcgacgag
ccatccattctcaaactcgacccgattctagagcttttaaagaagatctagctacctcat
ctgtgatatattgttaagcattcccaccacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGCATGTGTTCAGGTAGGCATCT 409 161 51 Antisense
GTGTTCAGGTAGGCATCTTGTAGGG 171 485 58 Antisense
AGGTAGGCATCTTGTAGGGGTTTTG 621 1 64 Antisense
GGCATCTTGTAGGGGTTTTGCCCTT 497 533 69 Antisense
CATCTTGTAGGGGTTTTGCCCTTAT 386 213 71 Antisense
TGCCCTTATTAACCCTACAAATAAT 215 583 87 Antisense
ACCCTACAAATAATTCCAGCACCTC 171 89 98 Antisense
AGAAGATCTAGCTACCTCATCTGTG 187 75 211 Antisense
GATCTAGCTACCTCATCTGTGATAT 15 421 215 Antisense
GCTACCTCATCTGTGATATATTGTT 466 303 221 Antisense
TATATTGTTAAGCATTCCCACCACC 95 663 237 Antisense
Sequence Source Affymetrix Proprietary Database