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[175248_at]

Description AV200251_rc /REP_DB=TREMBL Accession /GB=AV200251 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk559c2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 39      4grp_high_8_8 > 18      6grp_highest_nonorm > 81      6grp_total > 29      4grp_total > 29      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 267
1 2 3 4 range
A 221.9
(3)
P 		108.7
(-3)
P 		186.4
(1.1)
P 		147.2
(-1)
P 		113
B 198.2
(-0.9)
A 		256.3
(0.4)
P 		104.8
(-3)
P 		371.4
(3)
P 		267
C 280.9
(3)
P 		230.5
(-0.1)
P 		183.8
(-3)
P 		198.6
(-2.1)
P 		97
avr 233.7
(2.6) 		198.5
(-0) 		158.3
(-3) 		239.1
(3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 401
1 2 3 4 5 6 range
A 242.3
(0.3)
P 		230.3
(-0.1)
P 		199.6
(-1.2)
P 		145.1
(-3)
P 		300.5
(2.3)
P 		322.3
(3)
P 		177
B 394.1
(3)
P 		218.6
(-2.6)
P 		216.9
(-2.6)
P 		220.4
(-2.5)
P 		205.5
(-3)
P 		270.7
(-0.9)
P 		189
C 546.1
(3)
P 		212.1
(-2.4)
P 		173.7
(-3)
P 		213.2
(-2.4)
P 		246.3
(-1.8)
P 		184.8
(-2.8)
P 		372
avr 394.2
(3) 		220.3
(-2.2) 		196.7
(-2.9) 		192.9
(-3) 		250.8
(-1.3) 		259.3
(-1) 		201
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 80.8
(3)
P 		23.6
(-2.8)
P 		48.7
(-0.2)
P 		21.5
(-3)
P 		59
B 63.2
(1.3)
A 		63.3
(1.3)
P 		24.3
(-3)
P 		79.1
(3)
P 		55
C 93
(3)
P 		66.3
(0.3)
P 		64.1
(0.1)
P 		33.5
(-3)
P 		60
avr 79
(3) 		51.1
(-1.9) 		45.7
(-2.8) 		44.7
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 44.7
(-2.1)
P 		81.9
(2)
P 		43.5
(-2.3)
P 		36.8
(-3)
P 		90.7
(3)
P 		78.5
(1.6)
P 		54
B 137.1
(3)
P 		72.8
(-1.6)
P 		52.7
(-3)
P 		58.4
(-2.6)
P 		83.5
(-0.8)
P 		100.9
(0.4)
P 		84
C 202.4
(3)
P 		64.7
(-2.2)
P 		44.2
(-3)
P 		42.9
(-3)
P 		79.7
(-1.6)
P 		61.9
(-2.3)
P 		160
avr 128.1
(3) 		73.1
(-1) 		46.8
(-2.9) 		46
(-3) 		84.6
(-0.2) 		80.4
(-0.5) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175248_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21962
Sequence Type Exemplar sequence
Representative Public ID AV200251 NCBI
Target Description AV200251_rc /REP_DB=TREMBL Accession /GB=AV200251 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk559c2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y61A9LA.8 ENSEMBL cdna:known chromosome:CEL140:V:4561932:4569857:-1 gene:Y61A9LA.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4561945-4562276(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y61A9LA.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK70666 Hypothetical protein Y61A9LA.8 [Caenorhabditis elegans] ref|NP_504239.2| Y61A9LA.8 [Caenorhabditis elegans] 0.0
blast CAE56771 Hypothetical protein CBG24575 [Caenorhabditis briggsae] 1.0E-135
blast CAG09129 unnamed protein product [Tetraodon nigroviridis] 1.0E-18
Sequence
Target Sequence 
>C. ELEGANS:175248_AT
gaaaacactccaaaatcgatatttaacaccaaattttttaaaagatgtttcagttttttg
aaaaaaaaaagcaaaaatttttcggtttttcaacaaaccggcagacctgctttccaagcc
taaactcaaatatcttggaacactactcctccccctgtttccggcccaaaaaatctgttt
atttttgtcttttatgtctcccacacactcctttagggttctcggtgtaaaacttgtttc
tcttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAACACTCCAAAATCGATATTTA 231 355 52 Antisense
TTTTTCAACAAACCGGCAGACCTGC 584 673 137 Antisense
CAACAAACCGGCAGACCTGCTTTCC 468 189 142 Antisense
ACCTGCTTTCCAAGCCTAAACTCAA 80 89 156 Antisense
GCTTTCCAAGCCTAAACTCAAATAT 651 301 160 Antisense
ACTCAAATATCTTGGAACACTACTC 151 99 175 Antisense
AATCTGTTTATTTTTGTCTTTTATG 487 169 223 Antisense
ATTTTTGTCTTTTATGTCTCCCACA 613 15 232 Antisense
TCCCACACACTCCTTTAGGGTTCTC 293 583 250 Antisense
CACACTCCTTTAGGGTTCTCGGTGT 133 195 255 Antisense
CTCGGTGTAAAACTTGTTTCTCTTG 684 227 272 Antisense
Sequence Source Affymetrix Proprietary Database