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[175246_s_at]

Description AV179606_rc /REP_DB=TREMBL Accession /GB=AV179606 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk595d6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 76      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 97      6grp_total > 67      4grp_total > 12      6grp_highest_sub > In      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 803
1 2 3 4 range
A 731.1
(-0.4)
P 		685.7
(-0.8)
P 		471.4
(-3)
P 		1068.6
(3)
P 		597
B 658.4
(-1.6)
P 		682
(-1.3)
P 		524.3
(-3)
P 		1082.3
(3)
P 		558
C 808.9
(-0.9)
P 		640.3
(-2.3)
P 		558.5
(-3)
P 		1274.3
(3)
P 		716
avr 732.8
(-0.9) 		669.3
(-1.5) 		518.1
(-3) 		1141.7
(3) 		624

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 810
1 2 3 4 5 6 range
A 762.4
(-2.5)
P 		764.5
(-2.5)
P 		1077.4
(0.2)
P 		983.2
(-0.6)
P 		700.8
(-3)
P 		1403.8
(3)
P 		703
B 898.5
(-1.9)
P 		806.5
(-2.7)
P 		1023.8
(-0.9)
P 		765.6
(-3)
P 		895.8
(-2)
P 		1511.2
(3)
P 		746
C 782.9
(-2.7)
P 		834.3
(-2.3)
P 		754.1
(-3)
P 		870.9
(-1.9)
P 		971.9
(-1)
P 		1416.3
(3)
P 		662
avr 814.6
(-2.9) 		801.8
(-3) 		951.8
(-1.6) 		873.2
(-2.3) 		856.2
(-2.5) 		1443.8
(3) 		642
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 266.2
(3)
P 		148.9
(-1.9)
P 		123.2
(-3)
P 		156.4
(-1.6)
P 		143
B 210
(1.9)
P 		168.4
(-0.4)
P 		121.5
(-3)
P 		230.6
(3)
P 		109
C 267.8
(3)
P 		184.1
(-3)
P 		194.6
(-2.2)
P 		214.9
(-0.8)
P 		84
avr 248
(3) 		167.1
(-1.8) 		146.4
(-3) 		200.6
(0.2) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 423
1 2 3 4 5 6 range
A 140.5
(-3)
P 		271.9
(0.9)
P 		234.6
(-0.2)
P 		249.4
(0.2)
P 		211.5
(-0.9)
P 		341.8
(3)
P 		201
B 312.6
(-1.2)
P 		268.5
(-1.9)
P 		248.6
(-2.2)
P 		202.8
(-3)
P 		363.9
(-0.3)
P 		563.5
(3)
P 		361
C 290.2
(-0.7)
P 		254.6
(-1.4)
P 		191.9
(-2.7)
P 		175.1
(-3)
P 		314.5
(-0.2)
P 		474.1
(3)
P 		299
avr 247.8
(-2.1) 		265
(-1.7) 		225
(-2.6) 		209.1
(-3) 		296.6
(-0.9) 		459.8
(3) 		251
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175246_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20762
Sequence Type Exemplar sequence
Representative Public ID AV179606 NCBI
Target Description AV179606_rc /REP_DB=TREMBL Accession /GB=AV179606 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk595d6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063047(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063047 NCBI Caenorhabditis elegans ZK1127.3 (ZK1127.3) mRNA, complete cds. 11/11 A 
SNAP00000033593 ENSEMBL cdna:SNAP chromosome:CEL140:II:7055227:7055943:1 11/11 None
GENEFINDER00000033606 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7055227:7055943:1 11/11 None
ZK1127.3 ENSEMBL cdna:known chromosome:CEL140:II:7055222:7056035:1 gene:ZK1127.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7055701-7056021(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1127.3
Entrez Gene 174154 Entrez gene
SwissProt Q23403 EMBL-EBI
WormBase CE28171 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93425 Hypothetical protein ZK1127.3 [Caenorhabditis elegans] ref|NP_495448.1| ZK1127.3 [Caenorhabditis elegans] 1.0E-117
blast B88197 protein ZK1127.3 [imported] - Caenorhabditis elegans 1.0E-109
blast AAB93425 Hypothetical protein ZK1127.3 [Caenorhabditis elegans] ref|NP_495448.1| ZK1127.3 [Caenorhabditis elegans] 1.0E-95
blast B88197 protein ZK1127.3 [imported] - Caenorhabditis elegans 2.0E-95
blast CAE73816 Hypothetical protein CBG21369 [Caenorhabditis briggsae] 3.0E-34
Sequence
Target Sequence 
>C. ELEGANS:175246_S_AT
aatggttcggtctgagattctgtgaagaaaatgaatcgtatccaagcgagtttaatagtg
tcaccgattacgaacttcccgagtatatcatggctgaagtgcgcgagctttcagataaga
gagcagaaagagaaagaaacacagacaacgggatcgtcgagtcggaaaagaagagtacca
tccccagaagattga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGTTCGGTCTGAGATTCTGTGA 425 163 15 Antisense
AAATGAATCGTATCCAAGCGAGTTT 466 119 43 Antisense
AAGCGAGTTTAATAGTGTCACCGAT 297 147 58 Antisense
TAGTGTCACCGATTACGAACTTCCC 29 655 70 Antisense
TCACCGATTACGAACTTCCCGAGTA 192 625 75 Antisense
ACTTCCCGAGTATATCATGGCTGAA 673 103 88 Antisense
GTATATCATGGCTGAAGTGCGCGAG 651 451 97 Antisense
GAAACACAGACAACGGGATCGTCGA 644 355 150 Antisense
GACAACGGGATCGTCGAGTCGGAAA 506 361 158 Antisense
GAAAAGAAGAGTACCATCCCCAGAA 81 355 179 Antisense
AAGAGTACCATCCCCAGAAGATTGA 123 153 185 Antisense
Sequence Source Affymetrix Proprietary Database