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[175244_at]

Description AV200651_rc /REP_DB=TREMBL Accession /GB=AV200651 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk578e3 : 3prime end, single read.
Cluster 6grp_total > 14      4grp_total > 43      6grp_cgc > 30      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2.1
(-3)
A 		6
(3)
A 		5.6
(2.4)
A 		4
(-0.1)
A 		4
B 4.9
(2.5)
A 		5.2
(3)
A 		3.1
(-0.6)
A 		1.7
(-3)
A 		4
C 2.8
(-0.2)
A 		3.5
(3)
A 		2.2
(-3)
A 		2.9
(0.2)
A 		1
avr 3.3
(-1.8) 		4.9
(3) 		3.6
(-0.9) 		2.9
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 8.5
(3)
A 		4.1
(-1)
A 		5.2
(0)
A 		2.9
(-2.1)
A 		2.5
(-2.5)
A 		1.9
(-3)
A 		7
B 5.1
(2.1)
A 		5.4
(3)
A 		3.9
(-1.3)
A 		4.9
(1.6)
A 		4.2
(-0.4)
A 		3.3
(-3)
A 		2
C 3
(-1.5)
A 		6.8
(3)
A 		2.2
(-2.4)
A 		4
(-0.3)
A 		1.7
(-3)
A 		1.9
(-2.8)
A 		5
avr 5.5
(3) 		5.4
(2.8) 		3.8
(-0.3) 		3.9
(-0.1) 		2.8
(-2.2) 		2.4
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.8
(-1.7)
A 		1.3
(1.7)
A 		1.5
(3)
A 		0.6
(-3)
A 		1
B 1.6
(3)
A 		1.3
(1.5)
A 		0.7
(-1.5)
A 		0.4
(-3)
A 		1
C 0.9
(1.8)
A 		1
(3)
A 		0.8
(0.6)
A 		0.5
(-3)
A 		1
avr 1.1
(2.1) 		1.2
(3) 		1
(1.3) 		0.5
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.6
(3)
A 		1.5
(2.5)
A 		1.1
(0.3)
A 		0.7
(-1.9)
A 		0.8
(-1.4)
A 		0.5
(-3)
A 		1
B 1.8
(3)
A 		1.8
(3)
A 		1
(-3)
A 		1.3
(-0.8)
A 		1.7
(2.3)
A 		1.2
(-1.5)
A 		1
C 1.1
(-1)
A 		2.1
(3)
A 		0.6
(-3)
A 		0.8
(-2.2)
A 		0.6
(-3)
A 		0.6
(-3)
A 		2
avr 1.5
(1.2) 		1.8
(3) 		0.9
(-2.4) 		0.9
(-2.4) 		1
(-1.8) 		0.8
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175244_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21572
Sequence Type Exemplar sequence
Representative Public ID AV200651 NCBI
Target Description AV200651_rc /REP_DB=TREMBL Accession /GB=AV200651 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk578e3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV200651
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV200651 AV200651_rc /REP_DB=TREMBL Accession /GB=AV200651 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk578e3 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026088 10/11 Negative Strand Matching Probes None
AC7.2a.1 10/11 Negative Strand Matching Probes None
AC7.2a.2 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5133631-5133911(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175244_AT
gaacctttttcactcaacgaatgcctcgccttgtttcgcgcaaaattcgaaagtcttccg
acgattccaccgggactcttggagcgtgacgtctccttggccggacggaattcgaactcc
ttcgatgtctccattcgcgcagccttcagacacagtgccaacgcgtccggtaatcgggcc
gatgagacactcttggaaccggcgtgcgcgtgatccagtgtctatagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACCTTTTTCACTCAACGAATGCC 611 345 14 Antisense
CCTCGCCTTGTTTCGCGCAAAATTC 255 267 37 Antisense
TCGCGCAAAATTCGAAAGTCTTCCG 509 597 49 Antisense
GGGACTCTTGGAGCGTGACGTCTCC 582 491 85 Antisense
TCTTGGAGCGTGACGTCTCCTTGGC 124 617 90 Antisense
TCTCCTTGGCCGGACGGAATTCGAA 226 609 105 Antisense
GAATTCGAACTCCTTCGATGTCTCC 14 325 121 Antisense
CCTTCAGACACAGTGCCAACGCGTC 454 269 156 Antisense
GCGTCCGGTAATCGGGCCGATGAGA 665 289 176 Antisense
GGCCGATGAGACACTCTTGGAACCG 322 543 190 Antisense
TGCGCGTGATCCAGTGTCTATAGGA 168 585 218 Antisense
Sequence Source Affymetrix Proprietary Database