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[175242_at]

Description AV185607_rc /REP_DB=TREMBL Accession /GB=AV185607 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk680h6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 39      4grp_highest_8_8 > 08      4grp_high_8_8 > 44      6grp_highest_nonorm > 83      6grp_total > 29      4grp_total > 51      6grp_highest_sub > Cu      6grp_cgc > 08      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 345
1 2 3 4 range
A 447.5
(3)
P 		436.4
(2.7)
P 		406.3
(1.9)
P 		215.8
(-3)
P 		232
B 379.6
(-3)
P 		557.2
(2.9)
P 		501.3
(1)
P 		560.9
(3)
P 		181
C 489.7
(1.1)
P 		547.6
(3)
P 		516.7
(2)
P 		362.5
(-3)
P 		185
avr 438.9
(-0.3) 		513.7
(3) 		474.8
(1.3) 		379.7
(-3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 299
1 2 3 4 5 6 range
A 580.5
(3)
P 		492.2
(0.8)
P 		436.6
(-0.7)
P 		399.5
(-1.6)
P 		455.4
(-0.2)
P 		344.1
(-3)
P 		236
B 576.7
(2.4)
P 		417.4
(-0.8)
P 		308.8
(-3)
P 		460.8
(0.1)
P 		607.5
(3)
P 		540.3
(1.7)
P 		299
C 501.1
(2.7)
P 		421.4
(0.1)
P 		494.7
(2.5)
P 		324.6
(-3)
P 		367.3
(-1.6)
P 		509.8
(3)
P 		185
avr 552.8
(3) 		443.7
(-1.1) 		413.4
(-2.3) 		395
(-3) 		476.7
(0.1) 		464.7
(-0.3) 		158
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 162.9
(3)
P 		94.7
(-0.1)
P 		106.2
(0.4)
P 		31.6
(-3)
P 		131
B 121
(-1.7)
P 		137.6
(3)
P 		116.2
(-3)
P 		119.5
(-2.1)
P 		21
C 162.1
(2.1)
P 		157.5
(1.9)
P 		180.1
(3)
P 		61.1
(-3)
P 		119
avr 148.7
(3) 		129.9
(1.6) 		134.2
(1.9) 		70.7
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 107
(-1.5)
P 		175
(3)
P 		95.1
(-2.3)
P 		101.3
(-1.8)
P 		137.4
(0.5)
P 		83.8
(-3)
P 		91
B 200.6
(1.4)
P 		138.9
(-0.8)
P 		75
(-3)
P 		122
(-1.4)
P 		246.8
(3)
P 		201.5
(1.4)
P 		172
C 185.7
(3)
P 		128.6
(0.2)
P 		125.9
(0)
P 		65.3
(-3)
P 		118.9
(-0.3)
P 		170.7
(2.3)
P 		120
avr 164.4
(2.7) 		147.5
(1.3) 		98.7
(-2.8) 		96.2
(-3) 		167.7
(3) 		152
(1.7) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175242_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22135
Sequence Type Exemplar sequence
Representative Public ID AV185607 NCBI
Target Description AV185607_rc /REP_DB=TREMBL Accession /GB=AV185607 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk680h6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K02G10.8 ENSEMBL cdna:known chromosome:CEL140:X:4709718:4711712:-1 gene:K02G10.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4709793-4710125(-) 100.0 100.0
Public Domain and Genome References
Ensembl K02G10.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39254 Dnaj domain (prokaryotic heat shock protein) protein 14 [Caenorhabditis elegans] ref|NP_508806.1| DNaJ domain (prokaryotic heat shock protein) family member (dnj-14) [Caenorhabditis elegans] 1.0E-107
blast CAE68637 Hypothetical protein CBG14527 [Caenorhabditis briggsae] 7.0E-81
blast AAH74594 DnaJ (Hsp40) homolog, subfamily C, member 5 [Xenopus tropicalis] ref|NP_001005622.1| DnaJ (Hsp40) homolog, subfamily C, member 5 [Xenopus tropicalis] 4.0E-24
Protein Domains
Database ID Description E-Value
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 8.00000015633185E-25
Pfam IPR001623 EMBL-EBI Heat shock protein DnaJ, N-terminal 4.8E-34
Trans Membrane
ID Number Of Domains Domain Boundaries
K02G10.8 1 131-153
Sequence
Target Sequence 
>C. ELEGANS:175242_AT
acttttctagttattcgttgcacacaaattttgttttcactctttcccactttaccccgt
tgttacgattattggtactgatgagtttatttcacactaatttcactttaaaaataaatt
cgaacctattgctcatgctctttctttccttcccgcctcgattcccatatttgtgtgctg
tatttttttttgtgtaacggttttctttctccactcccttgacttatataatttttaaaa
aatcattttcaatcagaaattccaaactccaactgtgaatatgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTTTCTAGTTATTCGTTGCACAC 491 99 27 Antisense
CGTTGCACACAAATTTTGTTTTCAC 463 247 42 Antisense
CCCGTTGTTACGATTATTGGTACTG 131 1 82 Antisense
GGTACTGATGAGTTTATTTCACACT 232 505 100 Antisense
TATTTCACACTAATTTCACTTTAAA 225 663 114 Antisense
ATTCGAACCTATTGCTCATGCTCTT 452 9 144 Antisense
CCTCGATTCCCATATTTGTGTGCTG 231 267 182 Antisense
TATTTGTGTGCTGTATTTTTTTTTG 583 661 194 Antisense
TGTGTAACGGTTTTCTTTCTCCACT 577 551 217 Antisense
TCTCCACTCCCTTGACTTATATAAT 71 611 234 Antisense
TCCAAACTCCAACTGTGAATATGCC 460 587 287 Antisense
Sequence Source Affymetrix Proprietary Database