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[175241_at] Sodium and potassium ATPases

Description AV200649_rc /REP_DB=TREMBL Accession /GB=AV200649 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk578d8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 13      6grp_total > 24      4grp_total > 61      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2185
1 2 3 4 range
A 3402.1
(3)
P 		2877.3
(1.5)
P 		2798.3
(1.3)
P 		1257.7
(-3)
P 		2144
B 3365.5
(3)
P 		2687.8
(0.8)
P 		2984.7
(1.8)
P 		1494.7
(-3)
P 		1871
C 3442.8
(3)
P 		2630.9
(0.8)
P 		3262.1
(2.5)
P 		1260.9
(-3)
P 		2182
avr 3403.5
(3) 		2732
(1) 		3015
(1.9) 		1337.8
(-3) 		2066

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1282
1 2 3 4 5 6 range
A 3324.5
(3)
P 		3102.8
(1.6)
P 		2519
(-2)
P 		2367.2
(-3)
P 		2564.1
(-1.8)
P 		2544.9
(-1.9)
P 		957
B 3335.9
(3)
P 		3139.8
(2.1)
P 		3228.5
(2.5)
P 		2769.7
(0.4)
P 		2053.5
(-3)
P 		2491.9
(-0.9)
P 		1282
C 3124
(3)
P 		3075.5
(2.6)
P 		2773.4
(0.4)
P 		3002.6
(2.1)
P 		2312.3
(-3)
P 		2665.3
(-0.4)
P 		812
avr 3261.5
(3) 		3106
(2) 		2840.3
(0.3) 		2713.2
(-0.5) 		2310
(-3) 		2567.4
(-1.4) 		952
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1055
1 2 3 4 range
A 1238.7
(3)
P 		624.6
(-0.5)
P 		731.5
(0.1)
P 		184.1
(-3)
P 		1055
B 1073.2
(3)
P 		663.8
(-0.3)
P 		691.6
(-0)
P 		318.5
(-3)
P 		755
C 1139.6
(3)
P 		756.4
(0.5)
P 		1136.9
(3)
P 		212.6
(-3)
P 		927
avr 1150.5
(3) 		681.6
(-0.1) 		853.3
(1) 		238.4
(-3) 		912

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 612
1 2 3 4 5 6 range
A 612.8
(-2.3)
P 		1103.5
(3)
P 		548.6
(-3)
P 		600.4
(-2.4)
P 		773.7
(-0.6)
P 		619.6
(-2.2)
P 		555
B 1160.7
(3)
P 		1045.1
(1.4)
P 		784
(-2.3)
P 		733.6
(-3)
P 		834.3
(-1.6)
P 		929.2
(-0.3)
P 		427
C 1157.9
(3)
P 		938.4
(0.6)
P 		705.9
(-1.9)
P 		603.8
(-3)
P 		748.2
(-1.4)
P 		892.2
(0.1)
P 		554
avr 977.1
(2.2) 		1029
(3) 		679.5
(-2.5) 		645.9
(-3) 		785.4
(-0.8) 		813.7
(-0.4) 		383
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175241_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22345
Sequence Type Exemplar sequence
Representative Public ID AV200649 NCBI
Target Description AV200649_rc /REP_DB=TREMBL Accession /GB=AV200649 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk578d8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077899(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077899 NCBI Caenorhabditis elegans F55F3.3 (F55F3.3) mRNA, complete cds. 11/11 None
F55F3.3.1 ENSEMBL cdna:known chromosome:CEL140:X:13765103:13770479:-1 gene:F55F3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13765356-13765642(-) 100.0 100.0
Public Domain and Genome References
Gene Title Sodium and potassium ATPases
Ensembl F55F3.3
Entrez Gene 181494 Entrez gene
SwissProt Q9XUY5 EMBL-EBI
WormBase CE18746 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.3835.1.S1_AT ATPase, Na+/K+ transporting, beta 1 polypeptide cfa
CANINE:1588963_AT ATPase, Na+/K+ transporting, beta 1 polypeptide cfa
DROSOPHILA_2:1640364_AT nervana 1 dm
DROSGENOME1:153468_AT nervana 1 dm
CHICKEN:GGA.3301.1.S1_AT ATPase, Na+/K+ transporting, beta 1 polypeptide gga
HG-U95AV2:37669_S_AT ATPase, Na+/K+ transporting, beta 1 polypeptide hs
HG-U133_PLUS_2:201242_S_AT ATPase, Na+/K+ transporting, beta 1 polypeptide hs
HG-U133A_2:201242_S_AT ATPase, Na+/K+ transporting, beta 1 polypeptide hs
HG-U133A:201242_S_AT ATPase, Na+/K+ transporting, beta 1 polypeptide hs
HG-FOCUS:201242_S_AT ATPase, Na+/K+ transporting, beta 1 polypeptide hs
HG-U133_PLUS_2:201243_S_AT ATPase, Na+/K+ transporting, beta 1 polypeptide hs
HG-U133A_2:201243_S_AT ATPase, Na+/K+ transporting, beta 1 polypeptide hs
HG-U133A:201243_S_AT ATPase, Na+/K+ transporting, beta 1 polypeptide hs
HUGENEFL:U16799_S_AT ATPase, Na+/K+ transporting, beta 1 polypeptide hs
U133_X3P:G4502276_3P_A_AT ATPase, Na+/K+ transporting, beta 1 polypeptide hs
U133_X3P:G12652534_3P_A_AT ATPase, Na+/K+ transporting, beta 1 polypeptide hs
HU35KSUBD:RC_N70392_AT ATPase, Na+/K+ transporting, beta 1 polypeptide hs
HG-U95B:45839_AT ATPase, Na+/K+ transporting, beta 1 polypeptide hs
HG-U133_PLUS_2:1558874_A_AT ATPase, Na+/K+ transporting, beta 1 polypeptide hs
HU35KSUBB:RC_F04335_AT ATPase, Na+/K+ transporting, beta 1 polypeptide hs
MG-U74AV2:160500_AT ATPase, Na+/K+ transporting, beta 1 polypeptide mm
MOE430A:1423890_X_AT ATPase, Na+/K+ transporting, beta 1 polypeptide mm
MOUSE430_2:1423890_X_AT ATPase, Na+/K+ transporting, beta 1 polypeptide mm
MOUSE430A_2:1423890_X_AT ATPase, Na+/K+ transporting, beta 1 polypeptide mm
MOE430A:1451152_A_AT ATPase, Na+/K+ transporting, beta 1 polypeptide mm
MOUSE430_2:1451152_A_AT ATPase, Na+/K+ transporting, beta 1 polypeptide mm
MOUSE430A_2:1451152_A_AT ATPase, Na+/K+ transporting, beta 1 polypeptide mm
MOE430A:1418453_A_AT ATPase, Na+/K+ transporting, beta 1 polypeptide mm
MOUSE430A_2:1418453_A_AT ATPase, Na+/K+ transporting, beta 1 polypeptide mm
MOUSE430_2:1418453_A_AT ATPase, Na+/K+ transporting, beta 1 polypeptide mm
MOE430A:1455949_AT ATPase, Na+/K+ transporting, beta 1 polypeptide mm
MOUSE430A_2:1455949_AT ATPase, Na+/K+ transporting, beta 1 polypeptide mm
MOUSE430_2:1455949_AT ATPase, Na+/K+ transporting, beta 1 polypeptide mm
MU11KSUBB:X61433_S_AT ATPase, Na+/K+ transporting, beta 1 polypeptide mm
MU11KSUBB:MSA.10923.0_S_AT ATPase, Na+/K+ transporting, beta 1 polypeptide mm
MG-U74AV2:161467_F_AT ATPase, Na+/K+ transporting, beta 1 polypeptide mm
MOE430A:1439036_A_AT ATPase, Na+/K+ transporting, beta 1 polypeptide mm
MOUSE430A_2:1439036_A_AT ATPase, Na+/K+ transporting, beta 1 polypeptide mm
MOUSE430_2:1439036_A_AT ATPase, Na+/K+ transporting, beta 1 polypeptide mm
MU19KSUBB:TC33085_AT ATPase, Na+/K+ transporting, beta 1 polypeptide, mRNA (cDNA clone MGC:6286 IMAGE:2648940) mm
MU19KSUBB:TC33086_AT ATPase, Na+/K+ transporting, beta 1 polypeptide, mRNA (cDNA clone MGC:6286 IMAGE:2648940) mm
MU19KSUBB:TC33087_AT ATPase, Na+/K+ transporting, beta 1 polypeptide, mRNA (cDNA clone MGC:6286 IMAGE:2648940) mm
RN-U34:RC_AI230614_S_AT ATPase, Na+/K+ transporting, beta 1 polypeptide rn
RG-U34A:RC_AI230614_S_AT ATPase, Na+/K+ transporting, beta 1 polypeptide rn
RN-U34:RC_AI112173_AT ATPase, Na+/K+ transporting, beta 1 polypeptide rn
RG-U34A:RC_AI112173_AT ATPase, Na+/K+ transporting, beta 1 polypeptide rn
RG-U34A:X63375EXON_AT ATPase, Na+/K+ transporting, beta 1 polypeptide rn
RG-U34C:RC_AI176376_S_AT ATPase, Na+/K+ transporting, beta 1 polypeptide rn
RAE230A:1386937_AT ATPase, Na+/K+ transporting, beta 1 polypeptide rn
RAT230_2:1386937_AT ATPase, Na+/K+ transporting, beta 1 polypeptide rn
RAE230A:1367814_AT ATPase, Na+/K+ transporting, beta 1 polypeptide rn
RAT230_2:1367814_AT ATPase, Na+/K+ transporting, beta 1 polypeptide rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
6814 sodium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5391 sodium:potassium-exchanging ATPase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04477 Hypothetical protein F55F3.3 [Caenorhabditis elegans] ref|NP_510300.1| F55F3.3 [Caenorhabditis elegans] 0.0
blast CAE63086 Hypothetical protein CBG07375 [Caenorhabditis briggsae] 1.0E-171
blast CAB02752 Hypothetical protein C17E4.9 [Caenorhabditis elegans] ref|NP_492506.1| C17E4.9 [Caenorhabditis elegans] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR000402 EMBL-EBI Na+/K+ ATPase, beta subunit 1.5E-62
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510300.1 1 50-72
F55F3.3.1 1 50-72
Sequence
Target Sequence 
>C. ELEGANS:175241_AT
ttatccctgttttatatgtaaccgcatctttttatccttcattcatactaattctctcat
gacggcagtactgtatctattttccttcttcctcagtcacctcatttatccttcattttt
cttgcaaaacaaagaacacacaaatttgtgatttgatttcatttacacaaacggttctaa
acatgttcatccactcaaacttttcaaattctgatcaattctttaagacttcccattgaa
ttttcttccta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATCCCTGTTTTATATGTAACCGC 336 681 13 Antisense
TATGTAACCGCATCTTTTTATCCTT 694 653 27 Antisense
ATCCTTCATTCATACTAATTCTCTC 697 37 46 Antisense
AATTCTCTCATGACGGCAGTACTGT 238 177 62 Antisense
AGTACTGTATCTATTTTCCTTCTTC 48 63 79 Antisense
TCATTTATCCTTCATTTTTCTTGCA 472 619 114 Antisense
GATTTCATTTACACAAACGGTTCTA 502 427 167 Antisense
AACGGTTCTAAACATGTTCATCCAC 36 1 182 Antisense
AACATGTTCATCCACTCAAACTTTT 559 137 192 Antisense
GATCAATTCTTTAAGACTTCCCATT 690 421 225 Antisense
GACTTCCCATTGAATTTTCTTCCTA 447 371 239 Antisense
Sequence Source Affymetrix Proprietary Database