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[175240_at]

Description AU114925_rc /REP_DB=TREMBL Accession /GB=AU114925 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk723d9 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 42      6grp_total > 21      4grp_total > 21      6grp_high1_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 72
(3)
P 		33.1
(-1)
A 		14.2
(-3)
A 		67.5
(2.5)
A 		58
B 46.7
(0)
P 		23.1
(-2.8)
A 		21.5
(-3)
A 		71.4
(3)
P 		50
C 64.5
(1.1)
P 		32.2
(-1.8)
A 		19.1
(-3)
A 		85.7
(3)
P 		67
avr 61.1
(1.5) 		29.5
(-1.8) 		18.3
(-3) 		74.9
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 41.5
(-0.9)
P 		73
(0.9)
P 		112.2
(3)
P 		65.2
(0.4)
P 		60.3
(0.2)
P 		2.5
(-3)
A 		110
B 90.8
(2.2)
P 		74.9
(-0.3)
P 		96
(3)
P 		60.4
(-2.5)
P 		86.1
(1.5)
P 		57.2
(-3)
P 		39
C 51.4
(-2.2)
P 		108
(3)
P 		63.9
(-1.1)
P 		67.6
(-0.7)
P 		55.6
(-1.8)
P 		42.7
(-3)
A 		65
avr 61.2
(-0.1) 		85.3
(2.4) 		90.7
(3) 		64.4
(0.2) 		67.3
(0.5) 		34.1
(-3) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 26.2
(3)
P 		7.2
(-2.1)
A 		3.7
(-3)
A 		9.9
(-1.3)
A 		23
B 14.9
(2.8)
P 		5.7
(-2.6)
A 		5
(-3)
A 		15.2
(3)
P 		10
C 21.3
(3)
P 		9.2
(-2)
A 		6.7
(-3)
A 		14.5
(0.2)
P 		15
avr 20.8
(3) 		7.4
(-2.1) 		5.1
(-3) 		13.2
(0.1) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 7.7
(-1.3)
P 		26
(3)
P 		24.4
(2.6)
P 		16.5
(0.8)
P 		18.2
(1.2)
P 		0.6
(-3)
A 		25
B 31.6
(1.9)
P 		24.9
(-0.2)
P 		23.3
(-0.7)
P 		16
(-3)
P 		35
(3)
P 		21.3
(-1.3)
P 		19
C 19.1
(-1.3)
P 		33
(3)
P 		16.3
(-2.2)
P 		13.6
(-3)
P 		18
(-1.6)
P 		14.3
(-2.8)
A 		19
avr 19.5
(-0.2) 		28
(3) 		21.3
(0.5) 		15.4
(-1.8) 		23.7
(1.4) 		12.1
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175240_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22221
Sequence Type Exemplar sequence
Representative Public ID AU114925 NCBI
Target Description AU114925_rc /REP_DB=TREMBL Accession /GB=AU114925 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk723d9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076519(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076519 NCBI Caenorhabditis elegans C03F11.4 (C03F11.4) mRNA, complete cds. 11/11 A 
C03F11.4.1 ENSEMBL cdna:known chromosome:CEL140:X:5401450:5406408:-1 gene:C03F11.4 11/11 A 
C03F11.4.2 ENSEMBL cdna:known chromosome:CEL140:X:5401450:5406408:-1 gene:C03F11.4 11/11 A 
C03F11.4.3 ENSEMBL cdna:known chromosome:CEL140:X:5401450:5406408:-1 gene:C03F11.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5401460-5401743(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03F11.4
Entrez Gene 180813 Entrez gene
SwissProt Q11125 EMBL-EBI
WormBase CE33553 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508920 C03F11.4 [Caenorhabditis elegans] sp|Q11125|YX14_CAEEL Hypothetical protein C03F11.4 in chromosome X 0.0
blast T15397 hypothetical protein C03F11.4 - Caenorhabditis elegans 1.0E-133
blast AAK18885 Hypothetical protein C03F11.4 [Caenorhabditis elegans] 1.0E-133
Sequence
Target Sequence 
>C. ELEGANS:175240_AT
gcgatcgcttttcttcaggataatagagaaaatcttgcgtacaacttgatggaagaatgg
tttttggtgtcgaggaaaccgtctccaattgttttataaaactattcgaaaattgttatt
tgtacatttataaactgcaaattaaaacttctggttaatatgattgagctaggaactaat
ttgcagtttgtaattgccgaacttcaattttttgttatttattttatcgattgtaccatg
attcaattctgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGATCGCTTTTCTTCAGGATAATA 162 291 13 Antisense
GAAAATCTTGCGTACAACTTGATGG 458 353 40 Antisense
GGAAGAATGGTTTTTGGTGTCGAGG 231 527 63 Antisense
TGGTGTCGAGGAAACCGTCTCCAAT 338 553 77 Antisense
TCGAGGAAACCGTCTCCAATTGTTT 266 595 82 Antisense
AACTTCTGGTTAATATGATTGAGCT 360 139 158 Antisense
GAGCTAGGAACTAATTTGCAGTTTG 694 383 178 Antisense
TGCAGTTTGTAATTGCCGAACTTCA 4 579 194 Antisense
TGCCGAACTTCAATTTTTTGTTATT 165 585 207 Antisense
TTATTTATTTTATCGATTGTACCAT 355 675 227 Antisense
GATTGTACCATGATTCAATTCTGCG 643 433 241 Antisense
Sequence Source Affymetrix Proprietary Database