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[175239_at]

Description AU114256_rc /REP_DB=TREMBL Accession /GB=AU114256 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk716h9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 34      6grp_highest_nonorm > 13      6grp_total > 02      4grp_total > 50      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4450
1 2 3 4 range
A 861.9
(-1.8)
P 		4222.5
(3)
P 		4006.2
(2.7)
P 		45.9
(-3)
A 		4177
B 752.4
(-2)
P 		4485.1
(3)
P 		3731.6
(2)
P 		38.7
(-3)
A 		4446
C 785.6
(-1.9)
P 		4149.4
(3)
P 		4108.4
(2.9)
P 		34.9
(-3)
A 		4115
avr 800
(-1.9) 		4285.7
(3) 		3948.7
(2.5) 		39.8
(-3) 		4246

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7573
1 2 3 4 5 6 range
A 2402.7
(-1)
P 		6932.6
(3)
P 		1437.5
(-1.8)
P 		870.1
(-2.3)
P 		916
(-2.3)
P 		108.1
(-3)
P 		6825
B 2893.2
(-0.8)
P 		7680
(3)
P 		1277
(-2.1)
P 		744.6
(-2.5)
P 		1160.6
(-2.2)
P 		113.1
(-3)
P 		7567
C 2837.9
(-0.8)
P 		7548.3
(3)
P 		1042.4
(-2.2)
P 		784.2
(-2.5)
P 		1150.3
(-2.2)
P 		106.9
(-3)
P 		7441
avr 2711.3
(-0.9) 		7387
(3) 		1252.3
(-2.1) 		799.6
(-2.4) 		1075.6
(-2.2) 		109.4
(-3) 		7278
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1426
1 2 3 4 range
A 313.8
(-1.2)
P 		916.6
(2.2)
P 		1047.3
(3)
P 		6.7
(-3)
A 		1041
B 239.9
(-1.7)
P 		1107.7
(3)
P 		864.7
(1.7)
P 		8.2
(-3)
A 		1100
C 260.1
(-1.9)
P 		1193
(2)
P 		1431.9
(3)
P 		5.9
(-3)
A 		1426
avr 271.3
(-1.6) 		1072.4
(2.8) 		1114.6
(3) 		6.9
(-3) 		1108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2530
1 2 3 4 5 6 range
A 442.9
(-2)
P 		2465.6
(3)
P 		313.1
(-2.3)
P 		220.7
(-2.5)
P 		276.4
(-2.4)
P 		26.3
(-3)
P 		2439
B 1006.7
(-0.7)
P 		2556.4
(3)
P 		310.1
(-2.4)
P 		197.2
(-2.6)
P 		471.5
(-2)
P 		42.2
(-3)
P 		2514
C 1051.9
(-0.3)
P 		2303.2
(3)
P 		265.3
(-2.4)
P 		157.7
(-2.7)
P 		372.2
(-2.1)
P 		35.8
(-3)
P 		2267
avr 833.8
(-1) 		2441.7
(3) 		296.2
(-2.3) 		191.9
(-2.6) 		373.4
(-2.2) 		34.8
(-3) 		2407
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175239_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21968
Sequence Type Exemplar sequence
Representative Public ID AU114256 NCBI
Target Description AU114256_rc /REP_DB=TREMBL Accession /GB=AU114256 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk716h9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028633(11), NM_001028634(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028633 NCBI Caenorhabditis elegans F15E11.15a (F15E11.15) mRNA, complete cds. 11/11 None
NM_001028634 NCBI Caenorhabditis elegans F15E11.15b (F15E11.15) mRNA, complete cds. 11/11 None
SNAP00000041492 ENSEMBL cdna:SNAP chromosome:CEL140:V:2324462:2324980:-1 11/11 None
GENEFINDER00000041506 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2324462:2324980:-1 11/11 None
F15E11.15a ENSEMBL cdna:known chromosome:CEL140:V:2324338:2326675:-1 gene:F15E11.15 11/11 None
F15E11.15b.1 ENSEMBL cdna:known chromosome:CEL140:V:2324397:2324980:-1 gene:F15E11.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2324434-2324714(-) 100.0 100.0
Public Domain and Genome References
Ensembl F15E11.15
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001023804 F15E11.15a [Caenorhabditis elegans] gb|AAO38660.2| Hypothetical protein F15E11.15a [Caenorhabditis elegans] 1.0E-125
blast NP_001023805 F15E11.15b [Caenorhabditis elegans] gb|AAG41145.1| 5C820 [Caenorhabditis elegans] gb|AAV58877.1| Hypothetical protein F15E11.15b [Caenorhabditis elegans] 3.0E-98
blast NP_001023804 F15E11.15a [Caenorhabditis elegans] gb|AAO38660.2| Hypothetical protein F15E11.15a [Caenorhabditis elegans] 3.0E-98
Sequence
Target Sequence 
>C. ELEGANS:175239_AT
gaaatatcttcggcaagttctttgtcgacggacttccatacagtacggggcatggagctt
ttgctaaatggaagaagcacactttaagagctgatgatgatggacaggaaactgtgatca
aggtatttcagactgaggttcagttcatttcgccaagtggacgatcggttaccactttca
acactcttggagaaaacatcctcccattctccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATATCTTCGGCAAGTTCTTTGT 684 361 33 Antisense
TCGGCAAGTTCTTTGTCGACGGACT 144 605 42 Antisense
GTCGACGGACTTCCATACAGTACGG 533 473 56 Antisense
GGACTTCCATACAGTACGGGGCATG 501 523 62 Antisense
GTACGGGGCATGGAGCTTTTGCTAA 242 457 75 Antisense
GAAGCACACTTTAAGAGCTGATGAT 293 341 106 Antisense
GATCAAGGTATTTCAGACTGAGGTT 430 421 148 Antisense
GTTCAGTTCATTTCGCCAAGTGGAC 30 445 170 Antisense
TGGACGATCGGTTACCACTTTCAAC 677 547 190 Antisense
GTTACCACTTTCAACACTCTTGGAG 497 445 200 Antisense
GGAGAAAACATCCTCCCATTCTCCC 471 517 221 Antisense
Sequence Source Affymetrix Proprietary Database