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[175237_at] UDP-GalNAc

Description AU116158_rc /REP_DB=TREMBL Accession /GB=AU116158 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk741c7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 71      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 65      6grp_total > 70      4grp_total > 60      6grp_highest_sub > 04      6grp_cgc > 85      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 298
1 2 3 4 range
A 1040
(3)
P 		1035.3
(2.9)
P 		1026.8
(2.7)
P 		756.2
(-3)
P 		284
B 996.8
(1.5)
P 		1035.2
(2.5)
P 		1054.6
(3)
P 		827.5
(-3)
P 		227
C 991.5
(1.8)
P 		947.5
(0.9)
P 		1045.6
(3)
P 		771.8
(-3)
P 		274
avr 1009.4
(2.2) 		1006
(2.2) 		1042.3
(3) 		785.2
(-3) 		257

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 438
1 2 3 4 5 6 range
A 928.1
(-2.7)
P 		964.9
(-2.1)
P 		1059.8
(-0.6)
P 		1279
(3)
P 		1051.9
(-0.7)
P 		908.6
(-3)
P 		370
B 1046
(-0.8)
P 		1002.8
(-1.9)
P 		957.8
(-3)
P 		1193.2
(3)
P 		1007.5
(-1.7)
P 		1068.5
(-0.2)
P 		235
C 1029.7
(-0.1)
P 		1053.5
(0.2)
P 		1111.1
(1.1)
P 		1236.4
(3)
P 		1023.8
(-0.2)
P 		840.8
(-3)
P 		396
avr 1001.3
(-1.7) 		1007.1
(-1.6) 		1042.9
(-0.9) 		1236.2
(3) 		1027.7
(-1.2) 		939.3
(-3) 		297
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 268
1 2 3 4 range
A 378.7
(3)
P 		224.7
(-0.4)
P 		268.4
(0.5)
P 		110.7
(-3)
P 		268
B 317.9
(3)
P 		255.7
(0.4)
P 		244.4
(-0.1)
P 		176.3
(-3)
P 		142
C 328.2
(2.1)
P 		272.4
(0.6)
P 		364.4
(3)
P 		130.1
(-3)
P 		234
avr 341.6
(3) 		250.9
(0.3) 		292.4
(1.5) 		139
(-3) 		203

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 238
1 2 3 4 5 6 range
A 171.1
(-3)
P 		343.2
(3)
P 		230.8
(-0.9)
P 		324.4
(2.3)
P 		317.4
(2.1)
P 		221.2
(-1.3)
P 		172
B 363.9
(1.5)
P 		333.8
(0.4)
P 		232.6
(-3)
P 		316
(-0.2)
P 		409.3
(3)
P 		398.4
(2.6)
P 		177
C 381.7
(3)
P 		321.5
(0.3)
P 		282.8
(-1.5)
P 		248.6
(-3)
P 		331.3
(0.7)
P 		281.5
(-1.5)
P 		133
avr 305.6
(0.3) 		332.8
(1.9) 		248.7
(-3) 		296.3
(-0.3) 		352.7
(3) 		300.4
(-0) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175237_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20982
Sequence Type Exemplar sequence
Representative Public ID AU116158 NCBI
Target Description AU116158_rc /REP_DB=TREMBL Accession /GB=AU116158 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk741c7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066321(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066321 NCBI Caenorhabditis elegans ZK688.8 (UDP-GalNAc) mRNA, complete cds. 11/11 A 
ZK688.8.1 ENSEMBL cdna:known chromosome:CEL140:III:7914240:7917691:-1 gene:ZK688.8 11/11 None
ZK688.8.2 ENSEMBL cdna:known chromosome:CEL140:III:7914240:7917693:-1 gene:ZK688.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7914292-7914588(-) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-GalNAc
Gene Symbol gly-3
Ensembl ZK688.8
Entrez Gene 176112 Entrez gene
SwissProt P34678 EMBL-EBI
WormBase CE29649 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1591351_S_AT similar to polypeptide N-acetylgalactosaminyltransferase 1 cfa
CANINE_2:CFA.327.1.A1_S_AT similar to polypeptide N-acetylgalactosaminyltransferase 1 cfa
CANINE_2:CFAAFFX.27368.1.S1_AT similar to polypeptide N-acetylgalactosaminyltransferase 1 cfa
DROSOPHILA_2:1635173_AT polypeptide GalNAc transferase 5 dm
DROSGENOME1:145809_AT polypeptide GalNAc transferase 5 dm
CHICKEN:GGAAFFX.8348.1.S1_S_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) gga
HG-U133A:201723_S_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) hs
HG-U133A_2:201723_S_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) hs
HG-U133_PLUS_2:201723_S_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) hs
HU35KSUBA:T34527_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) hs
HU35KSUBB:RC_N52006_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) hs
HUGENEFL:S82597_RNA1_S_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) hs
HG-U133A:201724_S_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) hs
HG-U133_PLUS_2:201724_S_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) hs
HG-U133A_2:201724_S_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) hs
U133_X3P:G13124890_3P_A_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) hs
U133_X3P:G1136284_3P_A_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) hs
U133_X3P:HS2.80120.2.A1_3P_S_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) hs
U133_X3P:HS.80120.0.A3_3P_A_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) hs
HG-U133_PLUS_2:1568618_A_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) hs
HG-U133A_2:201722_S_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) hs
HG-FOCUS:201722_S_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) hs
HG-U133_PLUS_2:201722_S_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) hs
HG-U133A:201722_S_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) hs
HG-U95AV2:38041_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) hs
HG-U95C:51113_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) hs
HG-U95C:51116_G_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) hs
HG-U95C:51740_R_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) hs
HG-U95C:65411_R_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) hs
HU35KSUBB:RC_AA181919_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) hs
MG-U74AV2:97934_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 mm
MOE430A:1423237_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 mm
MOUSE430A_2:1423237_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 mm
MOUSE430_2:1423237_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 mm
MOE430A:1423236_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 mm
MOUSE430A_2:1423236_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 mm
MOUSE430_2:1423236_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 mm
MU19KSUBB:TC30724_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (Galnt1), mRNA mm
MU19KSUBB:TC30724_G_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (Galnt1), mRNA mm
MU19KSUBB:TC33963_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (Galnt1), mRNA mm
RG-U34A:U35890_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 rn
RAE230A:1369269_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 rn
RAT230_2:1369269_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 rn
RG-U34B:RC_AI045597_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 rn
RG-U34C:RC_AI236745_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 rn
RAE230A:1399045_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 rn
RAT230_2:1399045_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 rn
RAE230B:1381990_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 rn
RAT230_2:1381990_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 rn
RAE230B:1383374_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 rn
RAT230_2:1383374_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 rn
RG-U34B:RC_AI043831_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 rn
RG-U34B:RC_AI045810_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 rn
Protein Similarities
Method ID Description E-Value
blast AAA28224 Glycosylation related protein 3 [Caenorhabditis elegans] ref|NP_498722.1| ZK688.8 [Caenorhabditis elegans] sp|P34678|GALT3_CAEEL Polypeptide N-acetylgalactosaminyltransferase 3 (Protein-UDP acetylgalactosaminyltransferase 3) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 3) (pp-GaNTase 3) (GalNAc-T1) gb|AAC13669.1| GLY3; ppGaNTase [Caenorhabditis elegans] 0.0
blast A88515 polypeptide N-acetylgalactosaminyltransferase homolog - Caenorhabditis elegans 0.0
blast CAE66906 Hypothetical protein CBG12289 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 5.1E-9
Pfam IPR001173 EMBL-EBI Glycosyl transferase, family 2 2.4E-38
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498722.1 1 12-34
ZK688.8.1 1 12-34
ZK688.8.2 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:175237_AT
tcagtccaaaattctctctcggtgtccatcgttttcctattttccctctcaaaatcgtcc
ataccaccagtgccttcatattagagttgcgagtgcactctaacgagaatttgtgagaaa
aattcaactttttcggcctataataattgtaatttatgtaattgtgatagcctttgagat
tcgagcataatttatttattgatcccccatttcccttcaaaaatatccattttcattgca
tttcactccattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGTCCAAAATTCTCTCTCGGTGT 272 623 24 Antisense
TATTTTCCCTCTCAAAATCGTCCAT 602 659 61 Antisense
CATACCACCAGTGCCTTCATATTAG 16 215 83 Antisense
AGTGCCTTCATATTAGAGTTGCGAG 58 61 92 Antisense
GAGTTGCGAGTGCACTCTAACGAGA 460 397 107 Antisense
TTCAACTTTTTCGGCCTATAATAAT 251 685 146 Antisense
GTAATTGTGATAGCCTTTGAGATTC 246 463 181 Antisense
GATAGCCTTTGAGATTCGAGCATAA 386 425 189 Antisense
GCATAATTTATTTATTGATCCCCCA 328 307 208 Antisense
ATATCCATTTTCATTGCATTTCACT 427 21 246 Antisense
ATTTTCATTGCATTTCACTCCATTC 373 15 252 Antisense
Sequence Source Affymetrix Proprietary Database