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[175231_s_at]

Description AV180872_rc /REP_DB=TREMBL Accession /GB=AV180872 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk613c1 : 3prime end, single read.
Cluster 6grp_total > 77      4grp_total > 13      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.9
(-1.8)
A 		2.5
(0.6)
A 		1.6
(-3)
A 		3.1
(3)
A 		2
B 3
(3)
A 		1.2
(-3)
A 		2.2
(0.3)
A 		2.4
(1)
A 		2
C 1.7
(-0.3)
A 		1.3
(-3)
A 		1.3
(-3)
A 		2.2
(3)
A 		1
avr 2.2
(0.3) 		1.7
(-3) 		1.7
(-3) 		2.6
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 2.6
(-2.5)
A 		2.1
(-2.7)
A 		0.9
(-3)
A 		1.9
(-2.7)
A 		12.9
(0.4)
A 		22.3
(3)
A 		21
B 2
(-3)
A 		1.9
(-3)
A 		1.8
(-3)
A 		2.8
(-2.9)
A 		26.8
(-1.4)
A 		94.9
(3)
A 		93
C 3.1
(-2.9)
A 		2.7
(-2.9)
A 		2
(-3)
A 		1.9
(-3)
A 		8.5
(-2.3)
A 		60.5
(3)
A 		59
avr 2.6
(-2.9) 		2.2
(-2.9) 		1.6
(-3) 		2.2
(-2.9) 		16.1
(-1.5) 		59.2
(3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.7
(3)
A 		0.5
(-1)
A 		0.4
(-3)
A 		0.5
(-1)
A 		0
B 1
(3)
A 		0.3
(-3)
A 		0.5
(-1.3)
A 		0.5
(-1.3)
A 		1
C 0.6
(3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0
avr 0.8
(3) 		0.4
(-3) 		0.4
(-3) 		0.5
(-1.5) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 0.5
(-2.7)
A 		0.8
(-2.3)
A 		0.2
(-3)
A 		0.5
(-2.7)
A 		3.9
(1.3)
A 		5.4
(3)
A 		5
B 0.7
(-2.9)
A 		0.6
(-3)
A 		0.4
(-3)
A 		0.7
(-2.9)
A 		10.9
(-1.2)
A 		35.4
(3)
A 		35
C 1.1
(-2.8)
A 		0.8
(-2.9)
A 		0.5
(-3)
A 		0.4
(-3)
A 		2.8
(-2.3)
A 		20.3
(3)
A 		20
avr 0.8
(-2.9) 		0.7
(-2.9) 		0.4
(-3) 		0.5
(-3) 		5.9
(-1.4) 		20.4
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175231_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21964
Sequence Type Exemplar sequence
Representative Public ID AV180872 NCBI
Target Description AV180872_rc /REP_DB=TREMBL Accession /GB=AV180872 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk613c1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071671(11), NM_071672(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071671 NCBI Caenorhabditis elegans C17E7.9b (C17E7.9) mRNA, complete cds. 11/11 None
NM_071672 NCBI Caenorhabditis elegans C17E7.9a (C17E7.9) mRNA, complete cds. 11/11 None
SNAP00000014088 ENSEMBL cdna:SNAP chromosome:CEL140:V:3889196:3890674:-1 11/11 None
GENEFINDER00000014102 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3889196:3890674:-1 11/11 None
C17E7.9b ENSEMBL cdna:known chromosome:CEL140:V:3889196:3890674:-1 gene:C17E7.9 11/11 None
C17E7.9a ENSEMBL cdna:known chromosome:CEL140:V:3889196:3890674:-1 gene:C17E7.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3889115-3889445(-) 100.0 100.0
Public Domain and Genome References
Ensembl C17E7.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68184 Hypothetical protein C17E7.9a [Caenorhabditis elegans] ref|NP_504073.1| C17E7.9a [Caenorhabditis elegans] 1.0E-167
blast AAK68185 Hypothetical protein C17E7.9b [Caenorhabditis elegans] ref|NP_504072.1| C17E7.9b [Caenorhabditis elegans] 1.0E-150
blast T31824 hypothetical protein C17E7.9 - Caenorhabditis elegans 1.0E-150
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504072.1 1 173-195
NP_504073.1 1 201-223
C17E7.9b 1 173-195
C17E7.9a 1 201-223
SNAP00000014088 1 173-195
GENEFINDER00000014102 1 173-195
Sequence
Target Sequence 
>C. ELEGANS:175231_S_AT
gtggaactctgaaattctggtactgaaaaaaacggaagattcaaggcagtttggaatgca
aaacttggctcgcgagaacgttcatgaaggccttgcggacggaactcaggtcactacaac
cgtattcagaggcccacgagaaaatgagggaagagtcgtgctcaatcgcggctgcaagcc
aat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGAACTCTGAAATTCTGGTACTG 38 491 24 Antisense
AACGGAAGATTCAAGGCAGTTTGGA 673 141 54 Antisense
GGAATGCAAAACTTGGCTCGCGAGA 229 533 76 Antisense
AACTTGGCTCGCGAGAACGTTCATG 613 137 85 Antisense
GAACGTTCATGAAGGCCTTGCGGAC 388 347 99 Antisense
CATGAAGGCCTTGCGGACGGAACTC 635 19 106 Antisense
GGACGGAACTCAGGTCACTACAACC 583 523 120 Antisense
ACTACAACCGTATTCAGAGGCCCAC 455 99 136 Antisense
ACCGTATTCAGAGGCCCACGAGAAA 626 87 142 Antisense
GAGGGAAGAGTCGTGCTCAATCGCG 704 401 169 Antisense
TGCTCAATCGCGGCTGCAAGCCAAT 553 579 182 Antisense
Sequence Source Affymetrix Proprietary Database