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[175230_at]

Description AV184940_rc /REP_DB=TREMBL Accession /GB=AV184940 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk671e5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 29      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 30      6grp_total > 29      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2229
1 2 3 4 range
A 936
(-2.4)
P 		800.7
(-2.8)
P 		741.3
(-3)
P 		2688.9
(3)
P 		1948
B 836.5
(-2.7)
P 		763.4
(-2.9)
P 		725.2
(-3)
P 		2954.1
(3)
P 		2229
C 936.8
(-2.4)
P 		878.9
(-2.6)
P 		743.4
(-3)
P 		2593.5
(3)
P 		1850
avr 903.1
(-2.5) 		814.3
(-2.8) 		736.6
(-3) 		2745.5
(3) 		2009

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1047
1 2 3 4 5 6 range
A 1123.8
(3)
P 		884.6
(0.5)
P 		674.1
(-1.6)
P 		538.2
(-3)
P 		1076.9
(2.5)
P 		1122.8
(3)
P 		586
B 1116.3
(3)
P 		774.4
(-1.4)
P 		652.9
(-3)
P 		799.6
(-1.1)
P 		960.9
(1)
P 		690.7
(-2.5)
P 		463
C 1584.7
(3)
P 		853.8
(-1.4)
P 		751.3
(-2)
P 		580.1
(-3)
P 		952.7
(-0.8)
P 		778
(-1.8)
P 		1005
avr 1274.9
(3) 		837.6
(-1.1) 		692.8
(-2.5) 		639.3
(-3) 		996.8
(0.4) 		863.8
(-0.9) 		636
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 462
1 2 3 4 range
A 340.8
(1.6)
P 		173.8
(-3)
P 		193.8
(-2.5)
P 		393.6
(3)
P 		220
B 266.8
(-1.7)
P 		188.6
(-2.7)
P 		168
(-3)
P 		629.5
(3)
P 		462
C 310.1
(-1.1)
P 		252.7
(-3)
P 		259.1
(-2.8)
P 		437.3
(3)
P 		185
avr 305.9
(-0.9) 		205
(-3) 		207
(-3) 		486.8
(3) 		282

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 471
1 2 3 4 5 6 range
A 207.2
(-0.7)
P 		314.6
(2.7)
P 		146.8
(-2.7)
P 		136.5
(-3)
P 		325
(3)
P 		273.4
(1.4)
P 		189
B 388.4
(2.9)
P 		257.8
(-0.4)
P 		158.5
(-3)
P 		211.8
(-1.6)
P 		390.4
(3)
P 		257.6
(-0.4)
P 		232
C 587.4
(3)
P 		260.5
(-1.2)
P 		191.2
(-2.1)
P 		116.7
(-3)
P 		308.3
(-0.6)
P 		260.5
(-1.2)
P 		471
avr 394.3
(3) 		277.6
(0.1) 		165.5
(-2.7) 		155
(-3) 		341.2
(1.7) 		263.8
(-0.3) 		239
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175230_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21581
Sequence Type Exemplar sequence
Representative Public ID AV184940 NCBI
Target Description AV184940_rc /REP_DB=TREMBL Accession /GB=AV184940 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk671e5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y37E11AR.2 ENSEMBL cdna:known chromosome:CEL140:IV:3744051:3747650:1 gene:Y37E11AR.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3747429-3747646(+) 94.47 100.0
Public Domain and Genome References
Ensembl Y37E11AR.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68432 Hypothetical protein Y37E11AR.2 [Caenorhabditis elegans] ref|NP_500409.1| Y37E11AR.2 [Caenorhabditis elegans] 0.0
blast CAE63753 Hypothetical protein CBG08288 [Caenorhabditis briggsae] 1.0E-179
blast Q965X6 Ubiquitin ligase sia-1 (Seven in absentia homolog 1) gb|AAB94380.1| seven-in-absentia protein homologue-1 [Caenorhabditis elegans] 1.0E-174
Protein Domains
Database ID Description E-Value
Pfam IPR004162 EMBL-EBI Seven in absentia protein family 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:175230_AT
gcccccgcctcaaaatattaattatctgtatagcatatccttccatgactcggaatggat
aaccacagaacactacggattttttttcaattttttttggtttataaatttctttttttt
tgtattttacactcgatttacacattttacgagctttcctgtgttgttttatcgatattt
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCCCGCCTCAAAATATTAATTAT 141 285 16 Antisense
TTATCTGTATAGCATATCCTTCCAT 266 681 37 Antisense
GTATAGCATATCCTTCCATGACTCG 64 455 43 Antisense
GCATATCCTTCCATGACTCGGAATG 462 307 48 Antisense
GACTCGGAATGGATAACCACAGAAC 666 373 62 Antisense
TAACCACAGAACACTACGGATTTTT 82 629 75 Antisense
TATTTTACACTCGATTTACACATTT 191 663 138 Antisense
ATTTACACATTTTACGAGCTTTCCT 596 15 151 Antisense
ATTTTACGAGCTTTCCTGTGTTGTT 463 15 159 Antisense
GAGCTTTCCTGTGTTGTTTTATCGA 636 373 166 Antisense
TCCTGTGTTGTTTTATCGATATTTT 317 593 172 Antisense
Sequence Source Affymetrix Proprietary Database