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[175229_at]

Description AU113632_rc /REP_DB=TREMBL Accession /GB=AU113632 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk709h2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 20      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 66      6grp_total > 40      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1855
1 2 3 4 range
A 1724
(2)
P 		596.4
(-2.7)
P 		525.6
(-3)
P 		1970.9
(3)
P 		1445
B 1281.5
(-0.5)
P 		892.7
(-1.8)
P 		517.8
(-3)
P 		2373
(3)
P 		1855
C 1721.4
(0.7)
P 		823
(-2.8)
P 		778.3
(-3)
P 		2312.9
(3)
P 		1535
avr 1575.6
(0.6) 		770.7
(-2.4) 		607.2
(-3) 		2218.9
(3) 		1612

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1306
1 2 3 4 5 6 range
A 1366.3
(0.7)
P 		1568.5
(3)
P 		1557.7
(2.9)
P 		1453.4
(1.7)
P 		1029.6
(-3)
P 		1299.7
(0)
P 		539
B 2085.2
(3)
P 		1438.1
(-0.2)
P 		1451.6
(-0.1)
P 		1598.3
(0.6)
P 		860.9
(-3)
P 		1264.5
(-1)
P 		1224
C 1555.6
(2.9)
P 		1380
(1.6)
P 		1532.1
(2.7)
P 		1565.4
(3)
P 		779.5
(-3)
P 		1426.6
(1.9)
P 		786
avr 1669
(3) 		1462.2
(1.4) 		1513.8
(1.8) 		1539
(2) 		890
(-3) 		1330.3
(0.4) 		779
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 508
1 2 3 4 range
A 627.7
(3)
P 		129.5
(-3)
P 		137.4
(-2.9)
P 		288.5
(-1.1)
P 		498
B 408.7
(1.5)
P 		220.5
(-1.4)
P 		120
(-3)
P 		505.7
(3)
P 		386
C 569.8
(3)
P 		236.6
(-3)
P 		271.2
(-2.4)
P 		390
(-0.2)
P 		333
avr 535.4
(3) 		195.5
(-2.7) 		176.2
(-3) 		394.7
(0.6) 		359

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 474
1 2 3 4 5 6 range
A 251.9
(-3)
P 		557.8
(3)
P 		339.2
(-1.3)
P 		368.6
(-0.7)
P 		310.7
(-1.8)
P 		316.4
(-1.7)
P 		306
B 725.5
(3)
P 		478.7
(-0.9)
P 		352.5
(-3)
P 		423.3
(-1.8)
P 		349.8
(-3)
P 		471.5
(-1.1)
P 		376
C 576.6
(3)
P 		421.1
(0.1)
P 		389.9
(-0.5)
P 		314.8
(-1.8)
P 		252.2
(-3)
P 		477.6
(1.2)
P 		324
avr 518
(3) 		485.9
(2.1) 		360.5
(-1.4) 		368.9
(-1.2) 		304.2
(-3) 		421.8
(0.3) 		214
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175229_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21314
Sequence Type Exemplar sequence
Representative Public ID AU113632 NCBI
Target Description AU113632_rc /REP_DB=TREMBL Accession /GB=AU113632 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk709h2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070224(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070224 NCBI Caenorhabditis elegans C08F11.13 (C08F11.13) mRNA, complete cds. 11/11 A 
SNAP00000042594 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13607516:13609796:-1 11/11 None
C08F11.13.1 ENSEMBL cdna:known chromosome:CEL140:IV:13607409:13609852:-1 gene:C08F11.13 11/11 A 
C08F11.13.2 ENSEMBL cdna:known chromosome:CEL140:IV:13607423:13609838:-1 gene:C08F11.13 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000042608 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13607490-13607815(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08F11.13
Entrez Gene 178327 Entrez gene
SwissProt O62054 EMBL-EBI
WormBase CE27799 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05679 Hypothetical protein C08F11.13 [Caenorhabditis elegans] ref|NP_502625.1| C08F11.13 [Caenorhabditis elegans] 0.0
blast CAB05679 Hypothetical protein C08F11.13 [Caenorhabditis elegans] ref|NP_502625.1| C08F11.13 [Caenorhabditis elegans] 1.0E-175
blast CAB05575 Hypothetical protein F56G4.1 [Caenorhabditis elegans] emb|CAB04489.1| Hypothetical protein F56G4.1 [Caenorhabditis elegans] ref|NP_492908.1| F56G4.1 [Caenorhabditis elegans] 6.0E-16
blast CAE74571 Hypothetical protein CBG22335 [Caenorhabditis briggsae] 1.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502625.1 10 38-57,67-89,121-138,153-175,188-210,220-242,263-285,295-317,334-354,369-391
C08F11.13.1 10 38-57,67-89,121-138,153-175,188-210,220-242,263-285,295-317,334-354,369-391
C08F11.13.2 10 38-57,67-89,121-138,153-175,188-210,220-242,263-285,295-317,334-354,369-391
SNAP00000042594 8 38-57,67-89,127-149,159-181,205-227,237-259,276-295,310-332
Sequence
Target Sequence 
>C. ELEGANS:175229_AT
gaaatggtatttgtggttcctcttgattaattgtgtcatttggtcttcgattcctctcta
tgtaatcggaaaagttggaaacgttgtttttagccctaattccttgttttgggctctcct
cacattctgcgtattcacgatattcagcttctttgccaaaattgtctactgctgttataa
gaaaattagaactactgaatattctgttgtaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATGGTATTTGTGGTTCCTCTTG 183 359 42 Antisense
GTGGTTCCTCTTGATTAATTGTGTC 317 489 54 Antisense
TGTGTCATTTGGTCTTCGATTCCTC 458 555 73 Antisense
GTCTTCGATTCCTCTCTATGTAATC 625 467 84 Antisense
GATTCCTCTCTATGTAATCGGAAAA 596 431 90 Antisense
GCCCTAATTCCTTGTTTTGGGCTCT 424 285 134 Antisense
TCCTCACATTCTGCGTATTCACGAT 218 593 158 Antisense
GCGTATTCACGATATTCAGCTTCTT 615 291 170 Antisense
ATATTCAGCTTCTTTGCCAAAATTG 350 19 181 Antisense
CAAAATTGTCTACTGCTGTTATAAG 329 189 198 Antisense
GAACTACTGAATATTCTGTTGTAAC 693 349 230 Antisense
Sequence Source Affymetrix Proprietary Database