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[175227_s_at]

Description AU115749_rc /REP_DB=TREMBL Accession /GB=AU115749 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk736c9 : 3prime end, single read.
Cluster 6grp_total > 97      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 37.3
(-2.5)
A 		56.1
(-0.2)
P 		32.8
(-3)
A 		83.6
(3)
P 		51
B 29.4
(-2.6)
P 		26.7
(-3)
A 		40.8
(-0.7)
A 		63.8
(3)
P 		37
C 46.3
(-2)
P 		33.1
(-2.6)
A 		25.6
(-3)
A 		143.9
(3)
P 		118
avr 37.7
(-2.6) 		38.6
(-2.5) 		33.1
(-3) 		97.1
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 58.5
(-0.2)
P 		9
(-3)
A 		71.3
(0.5)
P 		46.3
(-0.9)
M 		85.4
(1.3)
P 		116.5
(3)
P 		108
B 37.3
(-2)
A 		14.2
(-3)
A 		48.7
(-1.6)
A 		66.8
(-0.8)
P 		107.6
(0.9)
P 		158.8
(3)
P 		145
C 15.2
(-3)
A 		50.7
(-1.8)
A 		33.8
(-2.4)
A 		52.1
(-1.7)
P 		124.5
(0.7)
P 		190.7
(3)
P 		176
avr 37
(-2.4) 		24.6
(-3) 		51.3
(-1.8) 		55.1
(-1.6) 		105.8
(0.7) 		155.3
(3) 		131
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 13.6
(3)
A 		12.2
(1.3)
P 		8.6
(-3)
A 		12.2
(1.3)
P 		5
B 9.4
(-0.6)
P 		6.6
(-3)
A 		9.5
(-0.5)
A 		13.6
(3)
P 		7
C 15.3
(-0.5)
P 		9.5
(-2.8)
A 		8.9
(-3)
A 		24.3
(3)
P 		15
avr 12.8
(-0) 		9.4
(-2.7) 		9
(-3) 		16.7
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 10.8
(-1.2)
P 		3.2
(-3)
A 		15.5
(-0.1)
P 		11.7
(-1)
M 		25.8
(2.4)
P 		28.4
(3)
P 		25
B 13
(-2.1)
A 		4.7
(-3)
A 		11.8
(-2.2)
A 		17.7
(-1.6)
P 		43.7
(1.3)
P 		59.2
(3)
P 		55
C 5.6
(-3)
A 		15.5
(-2)
A 		8.6
(-2.7)
A 		10.5
(-2.5)
P 		40.3
(0.6)
P 		63.9
(3)
P 		58
avr 9.8
(-2.7) 		7.8
(-3) 		12
(-2.4) 		13.3
(-2.2) 		36.6
(1) 		50.5
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175227_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21464
Sequence Type Exemplar sequence
Representative Public ID AU115749 NCBI
Target Description AU115749_rc /REP_DB=TREMBL Accession /GB=AU115749 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk736c9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070623(11), NM_070638(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070623 NCBI Caenorhabditis elegans Y116A8C.24 (Y116A8C.24) mRNA, complete cds. 11/11 A 
NM_070638 NCBI Caenorhabditis elegans Y116A8C.38 (Y116A8C.38) mRNA, complete cds. 11/11 A 
SNAP00000004097 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17068818:17070822:-1 11/11 None
SNAP00000004110 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17131540:17133572:1 11/11 None
GENEFINDER00000004175 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17131540:17133544:1 11/11 None
GENEFINDER00000004191 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17068818:17070822:-1 11/11 None
Y116A8C.24 ENSEMBL cdna:known chromosome:CEL140:IV:17068818:17070822:-1 gene:Y116A8C.24 11/11 A 
Y116A8C.38 ENSEMBL cdna:known chromosome:CEL140:IV:17131502:17133572:1 gene:Y116A8C.38 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000039114 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17133159-17133543(+) 100.0 100.0
chrIV:17068830-17069214(-) 99.29 99.29
Public Domain and Genome References
Gene Title

Ensembl Y116A8C.24
Y116A8C.38
Entrez Gene 178481 Entrez gene
178492 Entrez gene
SwissProt Q9U2U8 EMBL-EBI
Q9U2T8 EMBL-EBI
WormBase CE23332 Wormbase
CE33848 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55129 Hypothetical protein Y116A8C.24 [Caenorhabditis elegans] ref|NP_503024.1| Y116A8C.24 [Caenorhabditis elegans] 0.0
blast CAB55139 Hypothetical protein Y116A8C.38 [Caenorhabditis elegans] ref|NP_503039.2| Y116A8C.38 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.4E-54
Pfam IPR000719 EMBL-EBI Protein kinase 7.0E-54
Sequence
Target Sequence 
>C. ELEGANS:175227_S_AT
atgggaccagatctgattcgccttctcaaagatgttctcgtagctgcaccgacacaacgg
accactgcagataagttttataacgagcttcatgtcctttgtactcaaaaaggtgcattg
tcattgaacggacttacaatcaatcaaattcgtggcattagtcgtaaacgtgttgagcat
gttacataccgcaagttgtcatatgcgataagaatggtaacgagagagattggggtgatg
caccacagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGACCAGATCTGATTCGCCTTC 696 49 13 Antisense
TGATTCGCCTTCTCAAAGATGTTCT 585 563 26 Antisense
CAAAGATGTTCTCGTAGCTGCACCG 357 193 39 Antisense
TCGTAGCTGCACCGACACAACGGAC 377 603 50 Antisense
GACACAACGGACCACTGCAGATAAG 84 367 63 Antisense
GTTTTATAACGAGCTTCATGTCCTT 400 449 87 Antisense
GAGCTTCATGTCCTTTGTACTCAAA 393 387 97 Antisense
AAAAAGGTGCATTGTCATTGAACGG 637 127 119 Antisense
CAATCAAATTCGTGGCATTAGTCGT 181 181 153 Antisense
GGCATTAGTCGTAAACGTGTTGAGC 495 535 166 Antisense
GAGATTGGGGTGATGCACCACAGGA 585 397 238 Antisense
Sequence Source Affymetrix Proprietary Database