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[175224_at]

Description AV177250_rc /REP_DB=TREMBL Accession /GB=AV177250 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk526d6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 37      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 81      6grp_total > 08      4grp_total > 14      6grp_highest_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 702
1 2 3 4 range
A 688.1
(2.6)
P 		156.5
(-3)
P 		160.4
(-3)
P 		725.4
(3)
P 		569
B 636.6
(1.1)
P 		219
(-2.5)
P 		157.8
(-3)
P 		858.8
(3)
P 		701
C 761.2
(2.4)
P 		202.4
(-2.6)
P 		161.3
(-3)
P 		828.7
(3)
P 		667
avr 695.3
(2) 		192.6
(-2.7) 		159.8
(-3) 		804.3
(3) 		645

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 314.7
(0.3)
P 		315.6
(0.4)
P 		311.4
(0.2)
P 		301.2
(-0.2)
P 		228.3
(-3)
P 		383.2
(3)
P 		155
B 372.8
(3)
P 		222.9
(-3)
P 		288.4
(-0.4)
P 		225
(-2.9)
P 		233.3
(-2.6)
P 		272
(-1)
P 		150
C 437.2
(3)
P 		255.3
(-3)
P 		299
(-1.6)
P 		260.7
(-2.8)
P 		259
(-2.9)
P 		333.2
(-0.4)
P 		182
avr 374.9
(3) 		264.6
(-1.9) 		299.6
(-0.4) 		262.3
(-2) 		240.2
(-3) 		329.5
(1) 		135
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 250.6
(3)
P 		34
(-3)
P 		41.9
(-2.8)
P 		106.2
(-1)
P 		217
B 203
(3)
P 		54.1
(-2.4)
P 		36.6
(-3)
P 		183
(2.3)
P 		166
C 252
(3)
P 		58.2
(-2.9)
P 		56.2
(-3)
P 		139.7
(-0.4)
P 		196
avr 235.2
(3) 		48.8
(-2.9) 		44.9
(-3) 		143
(0.1) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 58
(-3)
P 		112.2
(3)
P 		67.8
(-1.9)
P 		76.4
(-1)
P 		68.9
(-1.8)
P 		93.3
(0.9)
P 		54
B 129.7
(3)
P 		74.2
(-1.8)
P 		70
(-2.1)
P 		59.6
(-3)
P 		94.8
(0)
P 		101.4
(0.6)
P 		70
C 162
(3)
P 		77.9
(-1.6)
P 		76.1
(-1.7)
P 		52.4
(-3)
P 		83.8
(-1.3)
P 		111.5
(0.2)
P 		110
avr 116.6
(3) 		88.1
(-0.2) 		71.3
(-2.1) 		62.8
(-3) 		82.5
(-0.8) 		102.1
(1.4) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175224_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21570
Sequence Type Exemplar sequence
Representative Public ID AV177250 NCBI
Target Description AV177250_rc /REP_DB=TREMBL Accession /GB=AV177250 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk526d6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067897(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067897 NCBI Caenorhabditis elegans Y67D8B.4 (Y67D8B.4) mRNA, complete cds. 11/11 None
Y67D8B.4 ENSEMBL cdna:known chromosome:CEL140:IV:3173568:3176111:-1 gene:Y67D8B.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009474 3/11 Cross Hyb Matching Probes None
GENEFINDER00000009486 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3137717-3138764(+) 100.0 100.0
chrIV:3173617-3174664(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y67D8B.4
Entrez Gene 190516 Entrez gene
SwissProt Q95XT9 EMBL-EBI
WormBase CE36344 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68549 Hypothetical protein Y67D8B.4 [Caenorhabditis elegans] ref|NP_500298.3| Y67D8B.4 [Caenorhabditis elegans] 4.0E-26
blast CAE59893 Hypothetical protein CBG03377 [Caenorhabditis briggsae] 1.0E-23
Sequence
Target Sequence 
>C. ELEGANS:175224_AT
gcccggttttgtgtcgagagactggcgacatgcgatggctgagccgaattttgttaagcg
atcctacaacgactactgaccccattacaatgacgtcatcagtaaacgggcgctccttgc
caccatcaccaccaccaccgatctcttcctccaccaacccaattctcgtctttttcttct
catccatattatctgtggtcccgacattcctgatagctatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCGGTTTTGTGTCGAGAGACTGG 112 287 15 Antisense
GAGAGACTGGCGACATGCGATGGCT 369 395 30 Antisense
GGCGACATGCGATGGCTGAGCCGAA 128 543 38 Antisense
GAGCCGAATTTTGTTAAGCGATCCT 582 385 55 Antisense
TAAGCGATCCTACAACGACTACTGA 76 637 69 Antisense
ACTACTGACCCCATTACAATGACGT 675 97 86 Antisense
GACCCCATTACAATGACGTCATCAG 648 381 92 Antisense
ACGTCATCAGTAAACGGGCGCTCCT 413 95 107 Antisense
CTTTTTCTTCTCATCCATATTATCT 297 223 184 Antisense
CATATTATCTGTGGTCCCGACATTC 516 213 199 Antisense
GTCCCGACATTCCTGATAGCTATGA 477 475 212 Antisense
Sequence Source Affymetrix Proprietary Database