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[175221_at]

Description AV184204_rc /REP_DB=TREMBL Accession /GB=AV184204 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk661d6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 15      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 60      6grp_total > 15      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 32      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 985
1 2 3 4 range
A 960
(3)
P 		380
(-2)
P 		377.6
(-2)
P 		260.2
(-3)
P 		700
B 1230.6
(3)
P 		488.4
(-1.5)
P 		295.1
(-2.7)
P 		245.3
(-3)
P 		985
C 1056
(3)
P 		418
(-2.3)
P 		424.7
(-2.2)
P 		327.7
(-3)
P 		728
avr 1082.2
(3) 		428.8
(-1.9) 		365.8
(-2.3) 		277.7
(-3) 		805

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 588
1 2 3 4 5 6 range
A 587.7
(3)
P 		531.8
(2.2)
P 		242.3
(-1.8)
P 		281.6
(-1.3)
P 		342.6
(-0.4)
P 		157.4
(-3)
P 		430
B 490.7
(0.3)
P 		701.8
(3)
P 		232.9
(-3)
P 		397.2
(-0.9)
P 		315.5
(-1.9)
P 		230.5
(-3)
P 		471
C 745.4
(3)
P 		637.5
(1.8)
P 		484.7
(0.2)
P 		230.4
(-2.5)
P 		307.6
(-1.7)
P 		184.5
(-3)
P 		561
avr 607.9
(2.8) 		623.7
(3) 		320
(-1.2) 		303.1
(-1.4) 		321.9
(-1.2) 		190.8
(-3) 		433
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 354
1 2 3 4 range
A 349.5
(3)
P 		82.5
(-2.1)
P 		98.7
(-1.8)
P 		38.1
(-3)
P 		311
B 392.4
(3)
P 		120.6
(-1.8)
P 		68.4
(-2.7)
P 		52.3
(-3)
P 		340
C 349.6
(3)
P 		120.2
(-1.7)
P 		148
(-1.1)
P 		55.3
(-3)
P 		294
avr 363.8
(3) 		107.8
(-1.9) 		105
(-1.9) 		48.6
(-3) 		315

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 238
1 2 3 4 5 6 range
A 108.3
(-0.2)
P 		189.1
(3)
P 		52.8
(-2.4)
P 		71.4
(-1.7)
P 		103.4
(-0.4)
P 		38.3
(-3)
P 		151
B 170.7
(0.9)
P 		233.6
(3)
P 		56.6
(-3)
P 		105.2
(-1.4)
P 		128.2
(-0.6)
P 		85.9
(-2)
P 		177
C 276.3
(3)
P 		194.5
(0.9)
P 		123.4
(-1)
P 		46.3
(-3)
P 		99.5
(-1.6)
P 		61.8
(-2.6)
P 		230
avr 185.1
(2.1) 		205.7
(3) 		77.6
(-2.3) 		74.3
(-2.5) 		110.4
(-1) 		62
(-3) 		144
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175221_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22347
Sequence Type Exemplar sequence
Representative Public ID AV184204 NCBI
Target Description AV184204_rc /REP_DB=TREMBL Accession /GB=AV184204 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk661d6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029268(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029268 NCBI Caenorhabditis elegans DYstrophin-like phenotype and CAPON related family member (dyc-1) (dyc-1) mRNA, complete cds. 11/11 None
C33G3.1b.2 ENSEMBL cdna:known chromosome:CEL140:X:14049455:14063775:1 gene:C33G3.1 11/11 A 
C33G3.1b.1 ENSEMBL cdna:known chromosome:CEL140:X:14049556:14063795:1 gene:C33G3.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181515 2 1 NM_001029268 175221_at (11), 180574_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14063453-14063732(+) 100.0 100.0
Public Domain and Genome References
Ensembl C33G3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD30431 Hypothetical protein C33G3.1b [Caenorhabditis elegans] emb|CAD30430.1| Hypothetical protein C33G3.1b [Caenorhabditis elegans] ref|NP_001024439.1| DYstrophin-like phenotype and CAPON related family member (dyc-1) [Caenorhabditis elegans] sp|Q8STF6|DYC1_CAEEL Dystrophin-like protein 1 (Dyb-1 binding and CAPON-related protein) 0.0
blast CAB01738 Hypothetical protein C33G3.1a [Caenorhabditis elegans] ref|NP_741925.2| DYstrophin-like phenotype and CAPON related family member (dyc-1) [Caenorhabditis elegans] emb|CAB44432.1| DYC-1 protein [Caenorhabditis elegans] 0.0
blast CAE63044 Hypothetical protein CBG07311 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006020 EMBL-EBI Phosphotyrosine interaction domain 6.3E-39
Sequence
Target Sequence 
>C. ELEGANS:175221_AT
ttccgtcataaaacagctttgcgcacacacacgaaaatgtaatgtttaaaaatttgcttc
atggaattttcagtcgatttctctcattttctcaacgcccctctatgctttccaatcgtg
acataaatcgaaacattcctgattctgtttagcgcttttattcctcaattgtattgtatg
ttcgctcagaaaaatggcctacatggcttgaaaaagagccgtggaacgtatcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCGTCATAAAACAGCTTTGCGCA 572 697 13 Antisense
GCTTTGCGCACACACACGAAAATGT 638 303 28 Antisense
ATTTGCTTCATGGAATTTTCAGTCG 176 17 64 Antisense
TTTTCAGTCGATTTCTCTCATTTTC 178 677 79 Antisense
CCTCTATGCTTTCCAATCGTGACAT 37 269 112 Antisense
CGTGACATAAATCGAAACATTCCTG 336 239 129 Antisense
CATTCCTGATTCTGTTTAGCGCTTT 252 217 146 Antisense
CTGTTTAGCGCTTTTATTCCTCAAT 98 239 157 Antisense
TCAATTGTATTGTATGTTCGCTCAG 407 633 177 Antisense
GTTCGCTCAGAAAAATGGCCTACAT 691 439 192 Antisense
GAAAAAGAGCCGTGGAACGTATCGA 606 335 222 Antisense
Sequence Source Affymetrix Proprietary Database