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[175219_s_at]

Description AV178470_rc /REP_DB=TREMBL Accession /GB=AV178470 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk566f7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 82      6grp_total > 38      4grp_total > 61      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 373
1 2 3 4 range
A 535.4
(3)
P 		317.3
(-1.4)
P 		403.2
(0.4)
P 		235.9
(-3)
P 		300
B 423.5
(2.7)
P 		430.5
(2.9)
P 		433.1
(3)
P 		239.3
(-3)
P 		194
C 430.4
(3)
P 		403.6
(2.4)
P 		343.8
(1.1)
P 		162.8
(-3)
P 		268
avr 463.1
(3) 		383.8
(1.1) 		393.4
(1.3) 		212.7
(-3) 		250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 394
1 2 3 4 5 6 range
A 387.9
(-0.2)
P 		324.1
(-1.2)
P 		212.7
(-3)
P 		247.9
(-2.4)
P 		305
(-1.5)
P 		587.4
(3)
P 		375
B 571
(3)
P 		535.7
(2.3)
P 		296
(-2.3)
P 		258.2
(-3)
P 		294.6
(-2.3)
P 		507.1
(1.8)
P 		313
C 606.8
(3)
P 		291.6
(-2.8)
P 		279
(-3)
P 		288.9
(-2.8)
P 		543.1
(1.8)
P 		384
(-1.1)
P 		328
avr 521.9
(3) 		383.8
(-0.2) 		262.6
(-3) 		265
(-2.9) 		380.9
(-0.3) 		492.8
(2.3) 		259
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 194.9
(3)
P 		68.9
(-1.7)
P 		105.4
(-0.3)
P 		34.5
(-3)
P 		160
B 135.1
(3)
P 		106.3
(0.9)
P 		100.4
(0.5)
P 		51
(-3)
P 		84
C 142.5
(3)
P 		116
(1.6)
P 		119.8
(1.8)
P 		27.4
(-3)
P 		115
avr 157.5
(3) 		97.1
(-0) 		108.5
(0.5) 		37.6
(-3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 71.5
(-1.4)
P 		115.3
(1.3)
P 		46.3
(-3)
P 		62.9
(-2)
P 		92
(-0.2)
P 		143
(3)
P 		97
B 198.7
(3)
P 		178.3
(2.1)
P 		71.9
(-2.8)
P 		68.4
(-3)
P 		119.7
(-0.6)
P 		189.1
(2.6)
P 		130
C 224.9
(3)
P 		89
(-1.9)
P 		71
(-2.5)
P 		58.1
(-3)
P 		175.8
(1.2)
P 		128.5
(-0.5)
P 		167
avr 165
(3) 		127.5
(0.8) 		63.1
(-3) 		63.1
(-3) 		129.2
(0.9) 		153.5
(2.3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175219_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21957
Sequence Type Exemplar sequence
Representative Public ID AV178470 NCBI
Target Description AV178470_rc /REP_DB=TREMBL Accession /GB=AV178470 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk566f7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071846
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F54D11.2.2 ENSEMBL cdna:known chromosome:CEL140:V:4617761:4628271:1 gene:F54D11.2 11/11 A 
F54D11.2.1 ENSEMBL cdna:known chromosome:CEL140:V:4617761:4628324:1 gene:F54D11.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071846 4/11 Cross Hyb Matching Probes None
F54D11.2.3 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4627396-4628283(+) 43.33 100.0
Public Domain and Genome References
Ensembl F54D11.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04823 Hypothetical protein F54D11.2 [Caenorhabditis elegans] ref|NP_504247.2| F54D11.2 [Caenorhabditis elegans] 0.0
blast CAE64155 Hypothetical protein CBG08774 [Caenorhabditis briggsae] 0.0
blast AAM70986 CG8233-PC, isoform C [Drosophila melanogaster] ref|NP_725358.1| CG8233-PC, isoform C [Drosophila melanogaster] 7.0E-19
Sequence
Target Sequence 
>C. ELEGANS:175219_S_AT
tttcccacacagccacattaattgaaatctcttattacggggacgcgaaattctgacaac
atatttgacgcgcaaaatatctcgtagcgaaaactacagtagaattctgtagttttcgcg
accaaatattttgctcgtcaaatatgctgcacaatacgcattttctcagaaattttgctg
ctcccctgttgttgtatgttttgccaccaacctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCCACACAGCCACATTAATTGA 523 669 32 Antisense
ACAGCCACATTAATTGAAATCTCTT 447 109 40 Antisense
GAAATCTCTTATTACGGGGACGCGA 38 363 55 Antisense
TACGGGGACGCGAAATTCTGACAAC 16 647 67 Antisense
GAATTCTGTAGTTTTCGCGACCAAA 452 323 133 Antisense
TCGCGACCAAATATTTTGCTCGTCA 143 599 147 Antisense
ATATTTTGCTCGTCAAATATGCTGC 561 19 157 Antisense
TTCTCAGAAATTTTGCTGCTCCCCT 667 691 194 Antisense
GCTCCCCTGTTGTTGTATGTTTTGC 466 299 211 Antisense
CCTGTTGTTGTATGTTTTGCCACCA 676 265 216 Antisense
TGTTGTATGTTTTGCCACCAACCTC 633 563 221 Antisense
Sequence Source Affymetrix Proprietary Database