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[175218_at]

Description AV185414_rc /REP_DB=TREMBL Accession /GB=AV185414 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk678a7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 30      6grp_total > 36      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7182
1 2 3 4 range
A 764.3
(-2.6)
P 		393.8
(-2.9)
P 		280.1
(-3)
P 		7168.5
(3)
P 		6888
B 832.5
(-2.3)
P 		351.7
(-2.9)
P 		290.4
(-3)
P 		5097.6
(3)
P 		4807
C 748.6
(-2.6)
P 		312.6
(-3)
P 		284.6
(-3)
P 		7462.1
(3)
P 		7178
avr 781.8
(-2.5) 		352.7
(-2.9) 		285
(-3) 		6576.1
(3) 		6291

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1208
1 2 3 4 5 6 range
A 1106.8
(2.4)
P 		1209.2
(3)
P 		939.5
(1.3)
P 		646
(-0.5)
P 		243.6
(-3)
P 		880.4
(1)
P 		966
B 1137.3
(2.4)
P 		1231.9
(3)
P 		863.2
(0.7)
P 		357.2
(-2.5)
P 		277.3
(-3)
P 		730.1
(-0.2)
P 		955
C 1451.7
(3)
P 		1133
(1.2)
P 		619.4
(-1.7)
P 		499.7
(-2.3)
P 		382.4
(-3)
P 		623.4
(-1.6)
P 		1069
avr 1231.9
(3) 		1191.4
(2.7) 		807.4
(0.3) 		501
(-1.7) 		301.1
(-3) 		744.6
(-0.1) 		931
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1191
1 2 3 4 range
A 278.3
(-1.7)
P 		85.5
(-2.9)
P 		73.2
(-3)
P 		1049.3
(3)
P 		976
B 265.5
(-1.8)
P 		86.9
(-2.9)
P 		67.3
(-3)
P 		1086.3
(3)
P 		1019
C 247.8
(-2.2)
P 		89.9
(-3)
P 		99.2
(-3)
P 		1258.2
(3)
P 		1168
avr 263.9
(-1.9) 		87.4
(-3) 		79.9
(-3) 		1131.3
(3) 		1051

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 465
1 2 3 4 5 6 range
A 204
(-0.8)
P 		430
(3)
P 		204.6
(-0.8)
P 		163.8
(-1.5)
P 		73.5
(-3)
P 		214.3
(-0.6)
P 		357
B 395.7
(2.7)
P 		410.1
(3)
P 		209.6
(-0.8)
P 		94.6
(-3)
P 		112.7
(-2.7)
P 		272.2
(0.4)
P 		316
C 538.1
(3)
P 		345.7
(0.4)
P 		157.7
(-2.2)
P 		100.5
(-3)
P 		123.8
(-2.7)
P 		208.7
(-1.5)
P 		438
avr 379.3
(2.7) 		395.3
(3) 		190.6
(-1.2) 		119.6
(-2.7) 		103.3
(-3) 		231.7
(-0.4) 		292
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175218_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22329
Sequence Type Exemplar sequence
Representative Public ID AV185414 NCBI
Target Description AV185414_rc /REP_DB=TREMBL Accession /GB=AV185414 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk678a7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV185414
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV185414 AV185414_rc /REP_DB=TREMBL Accession /GB=AV185414 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk678a7 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16602408-16602609(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175218_AT
tcaaggcggcggtcttgattcggccacccggggggttaatggttcgacccccacacccct
agccaccctgtcaatgccagaaacaccggcattgacaggcgaaggagcagctcgtggatc
atttcacaaacaaccacggcggcgaacttgggccgagaaggtcaatgagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGGCGGCGGTCTTGATTCGGCC 677 631 14 Antisense
GCCACCCTGTCAATGCCAGAAACAC 365 279 75 Antisense
ACCCTGTCAATGCCAGAAACACCGG 44 91 78 Antisense
GAAACACCGGCATTGACAGGCGAAG 673 355 93 Antisense
ACCGGCATTGACAGGCGAAGGAGCA 143 89 98 Antisense
GCATTGACAGGCGAAGGAGCAGCTC 615 303 102 Antisense
GGATCATTTCACAAACAACCACGGC 548 511 129 Antisense
ATTTCACAAACAACCACGGCGGCGA 631 15 134 Antisense
CCACGGCGGCGAACTTGGGCCGAGA 419 269 147 Antisense
GCGAACTTGGGCCGAGAAGGTCAAT 287 253 155 Antisense
ACTTGGGCCGAGAAGGTCAATGAGG 20 99 159 Antisense
Sequence Source Affymetrix Proprietary Database