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[175217_at]

Description AV182433_rc /REP_DB=TREMBL Accession /GB=AV182433 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk637g8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 97      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 93      6grp_total > 97      4grp_total > 03      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1003
1 2 3 4 range
A 220.6
(-2)
P 		106.3
(-3)
P 		142.7
(-2.7)
P 		769.9
(3)
P 		664
B 166.9
(-2.7)
P 		208.6
(-2.5)
P 		118
(-3)
P 		1109.7
(3)
P 		992
C 243.5
(-2.4)
P 		211.8
(-2.6)
P 		164.2
(-3)
P 		950.6
(3)
P 		786
avr 210.3
(-2.5) 		175.6
(-2.7) 		141.6
(-3) 		943.4
(3) 		802

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 796
1 2 3 4 5 6 range
A 187.8
(-2.6)
P 		148
(-3)
P 		174.1
(-2.7)
P 		312.9
(-1.3)
P 		591.9
(1.5)
P 		746.1
(3)
P 		598
B 273.6
(-2.6)
P 		238.5
(-3)
P 		245.3
(-2.9)
P 		401.6
(-1.3)
P 		547.3
(0.2)
P 		823.2
(3)
P 		585
C 204.1
(-2.7)
P 		198.3
(-2.7)
P 		160.6
(-3)
P 		356.4
(-1.5)
P 		560.5
(0.1)
P 		943.5
(3)
P 		783
avr 221.8
(-2.7) 		194.9
(-3) 		193.3
(-3) 		357
(-1.5) 		566.6
(0.5) 		837.6
(3) 		644
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 80.3
(0.8)
P 		23.1
(-3)
P 		37.3
(-2)
P 		112.7
(3)
P 		90
B 53.2
(-2.3)
P 		51.5
(-2.3)
P 		27.3
(-3)
P 		236.5
(3)
P 		209
C 80.6
(-1.6)
P 		60.9
(-2.8)
P 		57.2
(-3)
P 		160.3
(3)
P 		103
avr 71.4
(-1.6) 		45.2
(-2.8) 		40.6
(-3) 		169.8
(3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 34.6
(-3)
P 		52.6
(-2.3)
P 		37.9
(-2.9)
P 		79.4
(-1.2)
P 		178.6
(2.9)
P 		181.6
(3)
P 		147
B 95.2
(-2.1)
P 		79.4
(-2.5)
P 		59.6
(-3)
P 		106.4
(-1.9)
P 		222.4
(0.9)
P 		307
(3)
P 		247
C 75.6
(-2.2)
P 		60.5
(-2.6)
P 		40.9
(-3)
P 		71.7
(-2.3)
P 		181.4
(0.1)
P 		315.8
(3)
P 		275
avr 68.5
(-2.4) 		64.2
(-2.5) 		46.1
(-3) 		85.8
(-1.9) 		194.1
(1) 		268.1
(3) 		222
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175217_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21216
Sequence Type Exemplar sequence
Representative Public ID AV182433 NCBI
Target Description AV182433_rc /REP_DB=TREMBL Accession /GB=AV182433 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk637g8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065699(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065699 NCBI Caenorhabditis elegans K10D2.2 (K10D2.2) mRNA, complete cds. 11/11 None
K10D2.2.2 ENSEMBL cdna:known chromosome:CEL140:III:5185875:5188582:1 gene:K10D2.2 11/11 None
K10D2.2.1 ENSEMBL cdna:known chromosome:CEL140:III:5185877:5188582:1 gene:K10D2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5188252-5188532(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K10D2.2
Entrez Gene 175708 Entrez gene
SwissProt Q09408 EMBL-EBI
WormBase CE27429 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA62540 Hypothetical protein K10D2.2 [Caenorhabditis elegans] ref|NP_498100.1| K10D2.2 [Caenorhabditis elegans] 0.0
blast CAE60032 Hypothetical protein CBG03540 [Caenorhabditis briggsae] 0.0
blast AAG37940 Hypothetical protein Y34F4.3 [Caenorhabditis elegans] ref|NP_497314.1| Y34F4.3 [Caenorhabditis elegans] 6.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR002058 EMBL-EBI PAP/25A-associated domain 1.5E-19
Sequence
Target Sequence 
>C. ELEGANS:175217_AT
aaaatcacaagagctggttctcggaaattgttttcacccgtttatgtattttcatctccc
ttctcatatttccctgtgtgaatgtaaattgactcactaaattaatttctttattccacc
tgatttcgagactaataagtctgagcttaattaccctccctgcatccaaattccccaaat
aatattaacgatcaagttttatcaactgttgatttttctttctacggct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATCACAAGAGCTGGTTCTCGGA 698 133 34 Antisense
GAGCTGGTTCTCGGAAATTGTTTTC 101 387 44 Antisense
TTTTCACCCGTTTATGTATTTTCAT 235 677 64 Antisense
CGTTTATGTATTTTCATCTCCCTTC 226 247 72 Antisense
CCTTCTCATATTTCCCTGTGTGAAT 649 269 92 Antisense
AATTAATTTCTTTATTCCACCTGAT 10 177 133 Antisense
TATTCCACCTGATTTCGAGACTAAT 90 665 145 Antisense
AAGTCTGAGCTTAATTACCCTCCCT 477 157 170 Antisense
CTGCATCCAAATTCCCCAAATAATA 234 237 193 Antisense
AACGATCAAGTTTTATCAACTGTTG 394 145 220 Antisense
ACTGTTGATTTTTCTTTCTACGGCT 530 97 238 Antisense
Sequence Source Affymetrix Proprietary Database