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[175214_at]

Description AU115653_rc /REP_DB=TREMBL Accession /GB=AU115653 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk735b9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 17      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 70      6grp_total > 07      4grp_total > 38      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 388
1 2 3 4 range
A 345.4
(3)
P 		142.2
(-1.2)
P 		55.2
(-3)
P 		137
(-1.3)
P 		290
B 426.6
(3)
P 		128
(-1.8)
P 		56.4
(-3)
P 		138.9
(-1.7)
P 		370
C 443.6
(3)
P 		135
(-2.1)
P 		81
(-3)
P 		302.4
(0.7)
P 		363
avr 405.2
(3) 		135.1
(-1.8) 		64.2
(-3) 		192.8
(-0.7) 		341

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 443
1 2 3 4 5 6 range
A 509.7
(3)
P 		265.3
(-0.9)
P 		310.1
(-0.2)
P 		221.2
(-1.6)
P 		136.9
(-3)
P 		188.9
(-2.2)
P 		373
B 549.9
(3)
P 		308
(-0.6)
P 		236.2
(-1.6)
P 		225.8
(-1.8)
P 		143.5
(-3)
P 		202.4
(-2.1)
P 		406
C 573.6
(3)
P 		259.8
(-1.3)
P 		295.9
(-0.8)
P 		130.8
(-3)
P 		173
(-2.4)
P 		208.1
(-2)
P 		443
avr 544.4
(3) 		277.7
(-1.1) 		280.7
(-1) 		192.6
(-2.4) 		151.1
(-3) 		199.8
(-2.3) 		393
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 125.8
(3)
P 		30.9
(-2.1)
P 		14.4
(-3)
P 		20.1
(-2.7)
P 		111
B 136
(3)
P 		31.6
(-2.1)
P 		13.1
(-3)
P 		29.6
(-2.2)
P 		123
C 146.8
(3)
P 		38.8
(-2.5)
P 		28.2
(-3)
P 		51
(-1.8)
P 		119
avr 136.2
(3) 		33.8
(-2.2) 		18.6
(-3) 		33.6
(-2.2) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 94
(3)
P 		94.4
(3)
P 		67.5
(-0)
P 		56.1
(-1.3)
P 		41.3
(-3)
P 		46
(-2.5)
P 		53
B 191.3
(3)
P 		102.5
(-1)
P 		57.3
(-3)
P 		59.8
(-2.9)
P 		58.3
(-3)
P 		75.5
(-2.2)
P 		134
C 212.6
(3)
P 		79.3
(-1.3)
P 		75.3
(-1.4)
P 		26.3
(-3)
P 		56
(-2)
P 		69.7
(-1.6)
P 		186
avr 166
(3) 		92.1
(-0.7) 		66.7
(-2) 		47.4
(-3) 		51.9
(-2.8) 		63.7
(-2.2) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175214_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21291
Sequence Type Exemplar sequence
Representative Public ID AU115653 NCBI
Target Description AU115653_rc /REP_DB=TREMBL Accession /GB=AU115653 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk735b9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069114(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069114 NCBI Caenorhabditis elegans C33D9.6 (C33D9.6) mRNA, complete cds. 11/11 None
C33D9.6 ENSEMBL cdna:known chromosome:CEL140:IV:8775415:8778127:-1 gene:C33D9.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033367 1/11 Cross Hyb Matching Probes None
GENEFINDER00000033383 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8775483-8775767(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C33D9.6
Entrez Gene 259585 Entrez gene
SwissProt Q18377 EMBL-EBI
WormBase CE33760 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92287 Hypothetical protein C33D9.6 [Caenorhabditis elegans] ref|NP_501515.2| C33D9.6 [Caenorhabditis elegans] 0.0
blast XP_657286 Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] gb|EAL51907.1| Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] 2.0E-12
blast CAD01080 Hypothetical protein C33D9.9 [Caenorhabditis elegans] ref|NP_501514.1| C33D9.9 [Caenorhabditis elegans] 4.0E-12
Sequence
Target Sequence 
>C. ELEGANS:175214_AT
gtgaaacttctagttgggaccaaattgatgatattttttgagttagtttcactcttttaa
tgatccaattttgttgctttgatgtattatttttgtttcttcattttccatatttctacc
tttcaaatattcaacttactcaggaatgtacattttttctcatattgttttcccactgat
gacctttttaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAAACTTCTAGTTGGGACCAAAT 482 479 57 Antisense
TGATGATATTTTTTGAGTTAGTTTC 697 563 82 Antisense
AGTTTCACTCTTTTAATGATCCAAT 227 63 101 Antisense
GATCCAATTTTGTTGCTTTGATGTA 586 415 118 Antisense
TATTTTTGTTTCTTCATTTTCCATA 313 663 144 Antisense
TCATTTTCCATATTTCTACCTTTCA 671 619 157 Antisense
TCTACCTTTCAAATATTCAACTTAC 29 615 171 Antisense
TTCAACTTACTCAGGAATGTACATT 16 685 186 Antisense
TTTTTTCTCATATTGTTTTCCCACT 562 675 209 Antisense
ATATTGTTTTCCCACTGATGACCTT 163 19 218 Antisense
TTTCCCACTGATGACCTTTTTAAAG 473 667 225 Antisense
Sequence Source Affymetrix Proprietary Database