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[175213_at]

Description AV175970_rc /REP_DB=TREMBL Accession /GB=AV175970 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk499d4 : 3prime end, single read.
Cluster 6grp_total > 10      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 278
1 2 3 4 range
A 78.2
(-2)
M 		36.2
(-3)
A 		60.1
(-2.4)
A 		288.5
(3)
P 		252
B 123.7
(3)
P 		99.8
(1.7)
M 		10.5
(-3)
A 		52.5
(-0.8)
P 		113
C 116
(-1.1)
P 		87
(-1.9)
A 		46.6
(-3)
A 		270.8
(3)
P 		224
avr 106
(-0.6) 		74.3
(-1.7) 		39.1
(-3) 		203.9
(3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 17.8
(-2.8)
A 		12.9
(-3)
A 		140.3
(3)
A 		24.7
(-2.4)
A 		115
(1.8)
P 		55.3
(-1)
A 		127
B 35.5
(-1.5)
A 		57
(1.2)
A 		70.7
(3)
A 		62.9
(2)
A 		36.9
(-1.4)
A 		24.2
(-3)
A 		47
C 16.2
(-2.8)
A 		235.9
(3)
P 		41.3
(-2.1)
A 		58
(-1.7)
P 		8.1
(-3)
A 		42.5
(-2.1)
A 		228
avr 23.2
(-3) 		101.9
(3) 		84.1
(1.6) 		48.5
(-1.1) 		53.3
(-0.7) 		40.7
(-1.7) 		79
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 28.5
(0.6)
M 		7.9
(-3)
A 		15.7
(-1.6)
A 		42.2
(3)
P 		34
B 39.4
(3)
P 		24.7
(0.6)
M 		2.4
(-3)
A 		11.2
(-1.6)
P 		37
C 38.4
(1.5)
P 		25
(-1.2)
A 		16.3
(-3)
A 		45.7
(3)
P 		29
avr 35.4
(3) 		19.2
(-1.1) 		11.5
(-3) 		33
(2.4) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 3.3
(-3)
A 		4.6
(-2.8)
A 		30.6
(2.2)
A 		6.3
(-2.4)
A 		34.7
(3)
P 		13.5
(-1.1)
A 		31
B 12.4
(-1)
A 		19
(3)
A 		17.2
(1.9)
A 		16.7
(1.6)
A 		15
(0.6)
A 		9
(-3)
A 		10
C 6
(-2.7)
A 		72
(3)
P 		10.5
(-2.3)
A 		11.7
(-2.2)
P 		2.6
(-3)
A 		14.2
(-2)
A 		69
avr 7.2
(-3) 		31.9
(3) 		19.4
(-0) 		11.6
(-1.9) 		17.4
(-0.5) 		12.2
(-1.8) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175213_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22349
Sequence Type Exemplar sequence
Representative Public ID AV175970 NCBI
Target Description AV175970_rc /REP_DB=TREMBL Accession /GB=AV175970 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk499d4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C29F7.6 ENSEMBL cdna:known chromosome:CEL140:X:13436375:13441804:1 gene:C29F7.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018418 4/11 Cross Hyb Matching Probes None
SNAP00000013706 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13441514-13441790(+) 39.64 98.57
Public Domain and Genome References
Ensembl C29F7.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07325 Hypothetical protein C29F7.6 [Caenorhabditis elegans] ref|NP_510239.1| C29F7.6 [Caenorhabditis elegans] 0.0
blast CAA94916 Hypothetical protein F23D12.5 [Caenorhabditis elegans] ref|NP_510405.1| F23D12.5 [Caenorhabditis elegans] 2.0E-80
blast CAE69850 Hypothetical protein CBG16178 [Caenorhabditis briggsae] 7.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 1.5E-46
Sequence
Target Sequence 
>C. ELEGANS:175213_AT
ctagccggggactgtggccgataatccagtcgtggattgctccacttcccaatagaggct
gggtgaacctagggggtgaggccgtatatttaagtatatttaaaagtgtagtgaaagaag
aaaactacctgcctcagacgctttaaccgttcaaagggcatacctgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTAGCCGGGGACTGTGGCCGATAAT 579 187 94 Antisense
CTGTGGCCGATAATCCAGTCGTGGA 45 241 105 Antisense
TCCAGTCGTGGATTGCTCCACTTCC 422 589 118 Antisense
TTGCTCCACTTCCCAATAGAGGCTG 212 703 130 Antisense
GAGGCTGGGTGAACCTAGGGGGTGA 439 401 148 Antisense
GAACCTAGGGGGTGAGGCCGTATAT 32 1 158 Antisense
GGGGTGAGGCCGTATATTTAAGTAT 82 497 166 Antisense
GAAGAAAACTACCTGCCTCAGACGC 214 339 210 Antisense
TGCCTCAGACGCTTTAACCGTTCAA 409 585 223 Antisense
GACGCTTTAACCGTTCAAAGGGCAT 408 377 230 Antisense
AACCGTTCAAAGGGCATACCTGACA 587 143 238 Antisense
Sequence Source Affymetrix Proprietary Database