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[175212_at]

Description AV200298_rc /REP_DB=TREMBL Accession /GB=AV200298 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk560b8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 03      4grp_high_8_8 > 38      6grp_highest_nonorm > 62      6grp_total > 62      4grp_total > 41      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 138
(-3)
P 		305.3
(3)
P 		230
(0.3)
P 		229.3
(0.3)
P 		167
B 149.4
(-3)
P 		298.1
(3)
P 		292.9
(2.8)
P 		195.4
(-1.1)
P 		149
C 163.1
(-3)
P 		226.9
(3)
P 		208.9
(1.3)
P 		202.7
(0.7)
P 		64
avr 150.2
(-3) 		276.8
(3) 		243.9
(1.4) 		209.1
(-0.2) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 753
1 2 3 4 5 6 range
A 225.1
(-2.9)
P 		373.4
(-1.6)
P 		886.9
(3)
P 		453.7
(-0.9)
P 		598.4
(0.4)
P 		214.3
(-3)
P 		673
B 133.8
(-3)
P 		394.5
(-0.7)
P 		801.5
(3)
P 		687.4
(2)
P 		676.3
(1.9)
P 		264.4
(-1.8)
P 		668
C 170.5
(-3)
P 		407.1
(-0.7)
P 		777.8
(3)
P 		488.9
(0.1)
P 		552.1
(0.8)
P 		239.8
(-2.3)
P 		607
avr 176.5
(-3) 		391.7
(-1) 		822.1
(3) 		543.3
(0.4) 		608.9
(1) 		239.5
(-2.4) 		646
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 50.2
(0)
P 		66.3
(3)
P 		60.1
(1.9)
P 		33.6
(-3)
P 		33
B 47.6
(-1.9)
P 		73.6
(3)
P 		67.9
(1.9)
P 		41.6
(-3)
P 		32
C 54
(0.1)
P 		65.2
(1.8)
P 		72.8
(3)
P 		34.2
(-3)
P 		39
avr 50.6
(-0.3) 		68.4
(3) 		66.9
(2.7) 		36.5
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 41.5
(-3)
P 		132.8
(0.6)
P 		193.2
(3)
P 		115.1
(-0.1)
P 		180.6
(2.5)
P 		52.2
(-2.6)
P 		152
B 46.5
(-3)
P 		131.3
(-0.8)
P 		194.6
(0.9)
P 		182.1
(0.6)
P 		274.8
(3)
P 		98.6
(-1.6)
P 		228
C 63.2
(-3)
P 		124.2
(-0.3)
P 		198
(3)
P 		98.3
(-1.4)
P 		178.6
(2.1)
P 		80.3
(-2.2)
P 		135
avr 50.4
(-3) 		129.4
(-0.1) 		195.3
(2.4) 		131.8
(0) 		211.3
(3) 		77
(-2) 		161
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175212_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21557
Sequence Type Exemplar sequence
Representative Public ID AV200298 NCBI
Target Description AV200298_rc /REP_DB=TREMBL Accession /GB=AV200298 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk560b8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028336(11), NM_001028337(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028336 NCBI Caenorhabditis elegans Y54G2A.8a (Y54G2A.8) mRNA, complete cds. 11/11 None
NM_001028337 NCBI Caenorhabditis elegans Y54G2A.8b (Y54G2A.8) mRNA, complete cds. 11/11 None
GENEFINDER00000036598 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2835677:2838512:1 11/11 None
Y54G2A.8a ENSEMBL cdna:known chromosome:CEL140:IV:2835661:2838592:1 gene:Y54G2A.8 11/11 None
Y54G2A.8b ENSEMBL cdna:known chromosome:CEL140:IV:2835711:2839415:1 gene:Y54G2A.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036486 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2837500-2838521(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y54G2A.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68532 Hypothetical protein Y54G2A.8a [Caenorhabditis elegans] ref|NP_001023507.1| Y54G2A.8a [Caenorhabditis elegans] 0.0
blast AAV34784 Hypothetical protein Y54G2A.8b [Caenorhabditis elegans] ref|NP_001023508.1| Y54G2A.8b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:175212_AT
gttcaagatcattatccatcggacagttttcaatctagccagctcaagtggtggccctca
ggacaacaacccttcgggttctcacttactaaatcggatctgatcggaaacgatgcaaac
acctggataactctggaagctacctcatacaacatgacactagactactcctacgcaacg
acagtcccgcaagccatccagatcagaattttcagtggaagcccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAAGATCATTATCCATCGGACA 459 445 35 Antisense
GGACAGTTTTCAATCTAGCCAGCTC 45 527 55 Antisense
TAGCCAGCTCAAGTGGTGGCCCTCA 442 651 70 Antisense
TCAAGTGGTGGCCCTCAGGACAACA 181 633 78 Antisense
TCAGGACAACAACCCTTCGGGTTCT 422 605 92 Antisense
TTCGGGTTCTCACTTACTAAATCGG 107 591 107 Antisense
GATGCAAACACCTGGATAACTCTGG 600 411 146 Antisense
AACTCTGGAAGCTACCTCATACAAC 240 141 163 Antisense
ACATGACACTAGACTACTCCTACGC 669 105 186 Antisense
CCCGCAAGCCATCCAGATCAGAATT 260 261 220 Antisense
ATCAGAATTTTCAGTGGAAGCCCAC 396 29 236 Antisense
Sequence Source Affymetrix Proprietary Database