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[175211_at]

Description AV199979_rc /REP_DB=TREMBL Accession /GB=AV199979 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk554f8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 16      4grp_highest_8_8 > 52      4grp_high_8_8 > 17      6grp_highest_nonorm > 50      6grp_total > 16      4grp_total > 31      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 988
1 2 3 4 range
A 1069.1
(3)
P 		321.1
(-2.3)
P 		229.8
(-3)
P 		644.7
(-0)
P 		839
B 1217
(3)
P 		342.4
(-2.3)
P 		229
(-3)
P 		649.5
(-0.4)
P 		988
C 928
(3)
P 		421.3
(-2.1)
P 		329.4
(-3)
P 		623.5
(-0.1)
P 		599
avr 1071.4
(3) 		361.6
(-2.3) 		262.7
(-3) 		639.2
(-0.2) 		809

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 592
1 2 3 4 5 6 range
A 888.3
(3)
P 		669
(0.7)
P 		391.1
(-2.3)
P 		333.9
(-2.9)
P 		493.9
(-1.2)
P 		326.3
(-3)
P 		562
B 858.9
(3)
P 		629.3
(0.6)
P 		296.6
(-3)
P 		400.4
(-1.9)
P 		434.2
(-1.5)
P 		435.6
(-1.5)
P 		562
C 765.4
(3)
P 		673.2
(1.8)
P 		466.9
(-1)
P 		385.8
(-2.1)
P 		321.3
(-3)
P 		350.8
(-2.6)
P 		444
avr 837.5
(3) 		657.2
(0.7) 		384.9
(-2.8) 		373.4
(-3) 		416.5
(-2.4) 		370.9
(-3) 		467
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 336
1 2 3 4 range
A 389.3
(3)
P 		69.7
(-2.8)
P 		60.1
(-3)
P 		94.4
(-2.4)
P 		329
B 388.1
(3)
P 		84.6
(-2.4)
P 		53.1
(-3)
P 		138.4
(-1.5)
P 		335
C 307.2
(3)
P 		121.1
(-2.5)
P 		114.8
(-2.7)
P 		105.1
(-3)
P 		202
avr 361.5
(3) 		91.8
(-2.7) 		76
(-3) 		112.6
(-2.2) 		286

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 163.8
(0.2)
P 		237.9
(3)
P 		85.2
(-2.8)
P 		84.7
(-2.8)
P 		149
(-0.4)
P 		79.4
(-3)
P 		159
B 298.8
(3)
P 		209.5
(0.6)
P 		72
(-3)
P 		106
(-2.1)
P 		176.4
(-0.2)
P 		162.4
(-0.6)
P 		227
C 283.7
(3)
P 		205.4
(0.7)
P 		118.8
(-1.8)
P 		77.6
(-3)
P 		104
(-2.2)
P 		117.4
(-1.8)
P 		206
avr 248.8
(3) 		217.6
(1.8) 		92
(-2.9) 		89.4
(-3) 		143.1
(-1) 		119.7
(-1.9) 		159
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175211_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20984
Sequence Type Exemplar sequence
Representative Public ID AV199979 NCBI
Target Description AV199979_rc /REP_DB=TREMBL Accession /GB=AV199979 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk554f8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026001(11), NM_001025999(11), NM_001026000(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026001 NCBI Caenorhabditis elegans C13B9.4c (C13B9.4) mRNA, complete cds. 11/11 None
NM_001025999 NCBI Caenorhabditis elegans C13B9.4a (C13B9.4) mRNA, complete cds. 11/11 None
NM_001026000 NCBI Caenorhabditis elegans C13B9.4b (C13B9.4) mRNA, complete cds. 11/11 None
C13B9.4b.2 ENSEMBL cdna:known chromosome:CEL140:III:6632776:6652018:-1 gene:C13B9.4 11/11 A 
C13B9.4c.2 ENSEMBL cdna:known chromosome:CEL140:III:6632776:6652018:-1 gene:C13B9.4 11/11 A 
C13B9.4a ENSEMBL cdna:known chromosome:CEL140:III:6632776:6652018:-1 gene:C13B9.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6632893-6633174(-) 100.0 100.0
Public Domain and Genome References
Ensembl C13B9.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT92086 Hypothetical protein C13B9.4c [Caenorhabditis elegans] ref|NP_001021172.1| C13B9.4c [Caenorhabditis elegans] gb|AAQ84884.1| calcitonin receptor-like protein SEB-1B [Caenorhabditis elegans] 0.0
blast AAN73883 Hypothetical protein C13B9.4a [Caenorhabditis elegans] ref|NP_001021170.1| C13B9.4a [Caenorhabditis elegans] gb|AAQ84885.1| calcitonin receptor-like protein SEB-1C [Caenorhabditis elegans] sp|Q09460|SEB1_CAEEL Calcitonin receptor-like protein seb-1 0.0
blast AAT92085 Hypothetical protein C13B9.4b [Caenorhabditis elegans] ref|NP_001021171.1| C13B9.4b [Caenorhabditis elegans] gb|AAQ84883.1| calcitonin receptor-like protein SEB-1A [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001879 EMBL-EBI Hormone receptor, extracellular 1.1E-19
Pfam IPR000832 EMBL-EBI G-protein coupled receptor family 2 (secretin-like) 8.0E-90
Pfam IPR001879 EMBL-EBI Hormone receptor, extracellular 1.2E-19
Pfam IPR000832 EMBL-EBI G-protein coupled receptor family 2 (secretin-like) 8.0E-90
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021172.1 6 170-192,202-221,252-274,289-311,375-397,407-429
NP_001021170.1 6 170-192,202-221,252-274,289-311,375-397,407-429
NP_001021171.1 6 160-182,192-211,242-264,279-301,365-387,397-419
C13B9.4b.2 6 160-182,192-211,242-264,279-301,365-387,397-419
C13B9.4c.2 6 170-192,202-221,252-274,289-311,375-397,407-429
C13B9.4a 6 170-192,202-221,252-274,289-311,375-397,407-429
Sequence
Target Sequence 
>C. ELEGANS:175211_AT
cattttattcgacattgtttgcaaatttgaaaaaaatgaaactttcctcttgtatatttc
acatattttttccgcttttgatatttttgttctcagttgccaattgttgatcattgcttc
atcaggcttctttttgtagacttcatcttgcctagaacatgctttttttctgcattcatc
ggaaattctgagaatctcattttaaaacaatcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTTTATTCGACATTGTTTGCAAA 696 213 19 Antisense
AAACTTTCCTCTTGTATATTTCACA 550 127 57 Antisense
TATTTCACATATTTTTTCCGCTTTT 143 663 73 Antisense
TTTTGTTCTCAGTTGCCAATTGTTG 702 677 103 Antisense
GTTGCCAATTGTTGATCATTGCTTC 209 441 114 Antisense
ATCATTGCTTCATCAGGCTTCTTTT 387 31 128 Antisense
GGCTTCTTTTTGTAGACTTCATCTT 497 537 143 Antisense
GACTTCATCTTGCCTAGAACATGCT 609 371 157 Antisense
GAACATGCTTTTTTTCTGCATTCAT 368 351 173 Antisense
TCTGCATTCATCGGAAATTCTGAGA 485 609 187 Antisense
GAGAATCTCATTTTAAAACAATCCA 468 391 208 Antisense
Sequence Source Affymetrix Proprietary Database