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[175210_at]

Description AU113109_rc /REP_DB=TREMBL Accession /GB=AU113109 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk702g9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 57      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 79      6grp_total > 58      4grp_total > 12      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6179
1 2 3 4 range
A 3347.9
(-0.4)
P 		2404.2
(-1.9)
P 		1697.5
(-3)
P 		5496.3
(3)
P 		3799
B 3194.2
(-1.5)
P 		2588.7
(-2.1)
P 		1691.9
(-3)
P 		7871
(3)
P 		6179
C 3915.8
(-0.2)
P 		2239.7
(-2.6)
P 		1923.5
(-3)
P 		6244.4
(3)
P 		4321
avr 3486
(-0.8) 		2410.9
(-2.2) 		1771
(-3) 		6537.2
(3) 		4766

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1799
1 2 3 4 5 6 range
A 1820.4
(-0.8)
P 		1654.1
(-1.3)
P 		1181.3
(-2.9)
P 		1154.3
(-3)
P 		1273.9
(-2.6)
P 		2952.8
(3)
P 		1799
B 2285.2
(1.3)
P 		1639.5
(-1.5)
P 		1527.5
(-2)
P 		1568
(-1.8)
P 		1296.7
(-3)
P 		2685.3
(3)
P 		1389
C 1886.4
(-0.9)
P 		1476.1
(-2.5)
P 		1336.9
(-3)
P 		1342.8
(-3)
P 		1337.2
(-3)
P 		2882.1
(3)
P 		1545
avr 1997.3
(-0.3) 		1589.9
(-1.9) 		1348.6
(-2.8) 		1355
(-2.8) 		1302.6
(-3) 		2840.1
(3) 		1538
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1285
1 2 3 4 range
A 1219
(3)
P 		521.9
(-2.4)
P 		443.8
(-3)
P 		804.5
(-0.2)
P 		775
B 1018.6
(-0.1)
P 		639.4
(-1.8)
P 		392
(-3)
P 		1677.3
(3)
P 		1285
C 1296.2
(3)
P 		643.9
(-3)
P 		670.4
(-2.8)
P 		1052.9
(0.8)
P 		652
avr 1177.9
(3) 		601.7
(-2.1) 		502.1
(-3) 		1178.2
(3) 		676

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 744
1 2 3 4 5 6 range
A 335.6
(-2)
P 		588.3
(1.3)
P 		257.3
(-3)
P 		292.8
(-2.5)
P 		384.4
(-1.3)
P 		718.9
(3)
P 		462
B 795.1
(1)
P 		545.7
(-1.3)
P 		370.9
(-3)
P 		415.3
(-2.6)
P 		526.8
(-1.5)
P 		1001.4
(3)
P 		631
C 699.2
(0.7)
P 		450.4
(-1.4)
P 		340.3
(-2.4)
P 		270
(-3)
P 		432.7
(-1.6)
P 		964.8
(3)
P 		695
avr 610
(0) 		528.1
(-0.8) 		322.8
(-3) 		326
(-3) 		448
(-1.7) 		895
(3) 		572
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175210_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21514
Sequence Type Exemplar sequence
Representative Public ID AU113109 NCBI
Target Description AU113109_rc /REP_DB=TREMBL Accession /GB=AU113109 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk702g9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068597(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068597 NCBI Caenorhabditis elegans C43G2.1 (C43G2.1) mRNA, complete cds. 11/11 None
C43G2.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:6552076:6555874:-1 gene:C43G2.1 11/11 A 
C43G2.1.3 ENSEMBL cdna:known chromosome:CEL140:IV:6552492:6555422:-1 gene:C43G2.1 11/11 A 
C43G2.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:6552492:6555954:-1 gene:C43G2.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6552564-6552844(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C43G2.1
Entrez Gene 177416 Entrez gene
SwissProt Q94177 EMBL-EBI
WormBase CE27848 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:14536_S_AT expressed protein at
ATGENOME1:20536_S_AT expressed protein at
ATH1-121501:253059_S_AT expressed protein at
ATH1-121501:266075_S_AT expressed protein at
CANINE:1600316_AT similar to adiponectin receptor 1 cfa
CANINE:1584372_AT similar to adiponectin receptor 1 cfa
CANINE_2:CFAAFFX.16230.1.S1_S_AT similar to adiponectin receptor 1 cfa
DROSOPHILA_2:1636967_A_AT dm
DROSGENOME1:154206_AT dm
CHICKEN:GGA.8743.1.S1_AT adiponectin receptor 1 gga
HG-U133_PLUS_2:217748_AT adiponectin receptor 1 hs
PLASMODIUM_ANOPHELES:217748_AT adiponectin receptor 1 hs
HG-U133A:217748_AT adiponectin receptor 1 hs
HG-U133A_2:217748_AT adiponectin receptor 1 hs
HU35KSUBA:H83131_AT adiponectin receptor 1 hs
HU35KSUBB:RC_N38817_AT adiponectin receptor 1 hs
HU35KSUBD:RC_W95063_AT adiponectin receptor 1 hs
U133_X3P:G7705760_3P_AT adiponectin receptor 1 hs
HG-U95B:45809_AT adiponectin receptor 1 hs
MOUSE430_2:1439017_X_AT adiponectin receptor 1 mm
MOE430A:1439017_X_AT adiponectin receptor 1 mm
MOUSE430A_2:1439017_X_AT adiponectin receptor 1 mm
MOE430A:1451311_A_AT adiponectin receptor 1 mm
MOUSE430A_2:1451311_A_AT adiponectin receptor 1 mm
MOUSE430_2:1451311_A_AT adiponectin receptor 1 mm
MU19KSUBB:TC33834_AT Adiponectin receptor 1, mRNA (cDNA clone MGC:6920 IMAGE:2811173) mm
RG-U34B:RC_AA946034_AT adiponectin receptor 1 rn
RG-U34B:RC_AA946034_G_AT adiponectin receptor 1 rn
RG-U34C:AA800560_AT adiponectin receptor 1 rn
RAE230A:1388373_AT adiponectin receptor 1 rn
RAT230_2:1388373_AT adiponectin receptor 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB09107 Hypothetical protein C43G2.1 [Caenorhabditis elegans] ref|NP_500998.1| C43G2.1 [Caenorhabditis elegans] sp|Q94177|ADRL_CAEEL ADIPOR-like receptor C43G2.1 0.0
blast CAE61520 Hypothetical protein CBG05420 [Caenorhabditis briggsae] 0.0
blast AAF60489 Hypothetical protein Y32H12A.5 [Caenorhabditis elegans] ref|NP_498148.2| Y32H12A.5 [Caenorhabditis elegans] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR004254 EMBL-EBI Hly-III related proteins 1.9E-108
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500998.1 7 201-223,236-258,273-293,300-319,329-351,363-382,397-419
C43G2.1.1 7 201-223,236-258,273-293,300-319,329-351,363-382,397-419
C43G2.1.3 7 201-223,236-258,273-293,300-319,329-351,363-382,397-419
C43G2.1.2 7 201-223,236-258,273-293,300-319,329-351,363-382,397-419
Sequence
Target Sequence 
>C. ELEGANS:175210_AT
atcatgtttctatatatctatttccacattttcgctttacttgtaacccatgcacccaat
ctgatttctacgcttttccaaaaaatccaaattatctgagctctctactagtctgtacaa
agtctatacacatccacccgtttgcaattagttttcccaatattttcttctccttttttg
gctcaaattttccagtatttcatacatttcccgttgcttcatgtgctcccaacaacaatc
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCATGTTTCTATATATCTATTTCC 599 29 16 Antisense
ATATCTATTTCCACATTTTCGCTTT 649 19 29 Antisense
ATTTTCGCTTTACTTGTAACCCATG 307 15 43 Antisense
CAATCTGATTTCTACGCTTTTCCAA 692 181 72 Antisense
AAATCCAAATTATCTGAGCTCTCTA 216 117 98 Antisense
GAGCTCTCTACTAGTCTGTACAAAG 394 387 113 Antisense
TACAAAGTCTATACACATCCACCCG 230 643 131 Antisense
CACATCCACCCGTTTGCAATTAGTT 181 197 144 Antisense
GTTTGCAATTAGTTTTCCCAATATT 442 451 155 Antisense
TCATACATTTCCCGTTGCTTCATGT 329 619 215 Antisense
CTTCATGTGCTCCCAACAACAATCA 618 221 232 Antisense
Sequence Source Affymetrix Proprietary Database