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[175209_at]

Description AV180331_rc /REP_DB=TREMBL Accession /GB=AV180331 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk605h4 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 28      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_total > 28      4grp_total > 21      6grp_cgc > 12      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 138.9
(0.3)
P 		91.1
(-3)
P 		91.9
(-2.9)
P 		178.6
(3)
P 		88
B 118
(0.4)
P 		120.7
(0.6)
P 		72.5
(-3)
P 		153.9
(3)
P 		81
C 144
(3)
P 		117.5
(-0.1)
P 		92.5
(-3)
P 		137.8
(2.3)
P 		52
avr 133.6
(1) 		109.8
(-1) 		85.6
(-3) 		156.8
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 110.5
(3)
P 		74.6
(-3)
P 		93.1
(0.1)
P 		93.1
(0.1)
P 		96.1
(0.6)
P 		79.1
(-2.2)
P 		36
B 155.3
(3)
P 		127.5
(1.5)
P 		75.7
(-1.4)
A 		46.2
(-3)
P 		106.2
(0.3)
P 		82.1
(-1)
P 		109
C 118.3
(3)
P 		73.4
(-1.8)
P 		79.4
(-1.2)
M 		62.6
(-3)
P 		69.2
(-2.3)
P 		85.2
(-0.6)
P 		56
avr 128
(3) 		91.8
(-0.6) 		82.7
(-1.5) 		67.3
(-3) 		90.5
(-0.7) 		82.1
(-1.5) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 50.6
(3)
P 		19.8
(-3)
P 		24
(-2.2)
P 		26.1
(-1.8)
P 		31
B 37.6
(3)
P 		29.8
(0.8)
P 		16.8
(-3)
P 		32.8
(1.6)
P 		21
C 47.7
(3)
P 		33.8
(-0.4)
P 		32.2
(-0.8)
P 		23.2
(-3)
P 		25
avr 45.3
(3) 		27.8
(-2) 		24.3
(-3) 		27.4
(-2.1) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 20.4
(-2.3)
P 		26.5
(1.5)
P 		20.3
(-2.4)
P 		23.6
(-0.3)
P 		29
(3)
P 		19.3
(-3)
P 		10
B 54
(3)
P 		42.4
(1.3)
P 		18.4
(-2.1)
A 		12.2
(-3)
P 		43.2
(1.4)
P 		30.6
(-0.4)
P 		42
C 43.9
(3)
P 		22.4
(-1.1)
P 		20.2
(-1.5)
M 		12.6
(-3)
P 		22.4
(-1.1)
P 		28.5
(0)
P 		31
avr 39.4
(3) 		30.4
(0.7) 		19.6
(-2.1) 		16.1
(-3) 		31.5
(1) 		26.1
(-0.4) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175209_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22114
Sequence Type Exemplar sequence
Representative Public ID AV180331 NCBI
Target Description AV180331_rc /REP_DB=TREMBL Accession /GB=AV180331 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk605h4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F20B6.3 ENSEMBL cdna:known chromosome:CEL140:X:4177881:4186421:-1 gene:F20B6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4177891-4178172(-) 100.0 100.0
Public Domain and Genome References
Ensembl F20B6.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82317 Multidrug resistance protein family protein 6 [Caenorhabditis elegans] ref|NP_508710.2| Multidrug Resistance Protein family member (mrp-6) [Caenorhabditis elegans] 0.0
blast CAE68534 Hypothetical protein CBG14361 [Caenorhabditis briggsae] 0.0
blast NP_001007039 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 [Danio rerio] emb|CAD24440.2| novel ABC transporter similar to human multidrug-resistance proteins (MRP) [Danio rerio] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001140 EMBL-EBI ABC transporter, transmembrane region 7.5E-11
Pfam IPR001140 EMBL-EBI ABC transporter, transmembrane region 9.3E-24
Pfam IPR003439 EMBL-EBI ABC transporter 3.1E-37
Pfam IPR003439 EMBL-EBI ABC transporter 4.0E-44
Trans Membrane
ID Number Of Domains Domain Boundaries
F20B6.3 11 31-48,146-165,230-252,325-347,362-384,792-814,853-875,924-946,950-967,1036-1058,1063-1085
Sequence
Target Sequence 
>C. ELEGANS:175209_AT
aaatcataacttgtttcactttcacatcattttatagcaattcaattgttcaatgtcacc
ttttcaaagggaatcgagattgtttttatttcactttttattccatcattccattgagca
caataattccttgttcataccatgatctaagatcatttcggttttggcccagtgatcgca
tcgtccacatcgtgtagctttatatgtgtcgaatttaatttttctttggtaatatcagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCATAACTTGTTTCACTTTCAC 383 113 16 Antisense
TCACTTTCACATCATTTTATAGCAA 124 627 31 Antisense
CCATCATTCCATTGAGCACAATAAT 271 271 118 Antisense
GAGCACAATAATTCCTTGTTCATAC 230 391 131 Antisense
AATTCCTTGTTCATACCATGATCTA 449 177 140 Antisense
GATCTAAGATCATTTCGGTTTTGGC 307 419 159 Antisense
AAGATCATTTCGGTTTTGGCCCAGT 189 153 164 Antisense
CATTTCGGTTTTGGCCCAGTGATCG 334 215 169 Antisense
CATCGTCCACATCGTGTAGCTTTAT 184 213 194 Antisense
GTGTAGCTTTATATGTGTCGAATTT 584 485 207 Antisense
TAATTTTTCTTTGGTAATATCAGCA 548 633 231 Antisense
Sequence Source Affymetrix Proprietary Database