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[175208_s_at]

Description AV180256_rc /REP_DB=TREMBL Accession /GB=AV180256 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk604g8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 91      6grp_total > 96      4grp_total > 60      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 280.9
(3)
P 		253.4
(0.3)
P 		256.2
(0.6)
P 		220.3
(-3)
P 		61
B 252.3
(0.8)
P 		280.4
(2.3)
P 		292.4
(3)
P 		185.3
(-3)
P 		107
C 273.1
(0.8)
P 		247.4
(-0.3)
P 		324.5
(3)
P 		184.7
(-3)
P 		140
avr 268.8
(1.6) 		260.4
(1.1) 		291
(3) 		196.8
(-3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 134.2
(-3)
P 		206.6
(0.4)
P 		170.5
(-1.3)
P 		188.4
(-0.4)
P 		135
(-3)
P 		260.9
(3)
P 		127
B 137.1
(-3)
P 		178.6
(-0.4)
P 		145
(-2.5)
P 		162.8
(-1.4)
P 		234.5
(3)
P 		226.5
(2.5)
P 		97
C 210.1
(0.7)
P 		121
(-3)
P 		158.6
(-1.4)
P 		197.7
(0.2)
P 		263.7
(3)
P 		215.2
(1)
P 		143
avr 160.5
(-2.8) 		168.7
(-2.2) 		158
(-3) 		183
(-1) 		211.1
(1.2) 		234.2
(3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 102.3
(3)
P 		55
(-1)
P 		67
(-0)
P 		32.2
(-3)
P 		70
B 80.5
(3)
P 		69.3
(1.4)
P 		67.8
(1.1)
P 		39.5
(-3)
P 		41
C 90.4
(1.3)
P 		71.1
(-0.1)
P 		113.1
(3)
P 		31.1
(-3)
P 		82
avr 91.1
(3) 		65.1
(0.3) 		82.6
(2.1) 		34.3
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 24.7
(-3)
P 		73.5
(3)
P 		37.1
(-1.5)
P 		47.8
(-0.2)
P 		40.8
(-1)
P 		63.5
(1.8)
P 		49
B 47.7
(-1.8)
P 		59.4
(-0.6)
P 		35.2
(-3)
P 		43.1
(-2.2)
P 		95.3
(3)
P 		84.5
(1.9)
P 		60
C 77.9
(2.1)
P 		36.9
(-3)
P 		40.4
(-2.6)
P 		39.8
(-2.6)
P 		85.3
(3)
P 		72
(1.4)
P 		48
avr 50.1
(-0.9) 		56.6
(0.1) 		37.6
(-3) 		43.6
(-2) 		73.8
(3) 		73.3
(2.9) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175208_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21515
Sequence Type Exemplar sequence
Representative Public ID AV180256 NCBI
Target Description AV180256_rc /REP_DB=TREMBL Accession /GB=AV180256 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk604g8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171282(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171282 NCBI Caenorhabditis elegans F52C12.2 (F52C12.2) mRNA, complete cds. 11/11 None
GENEFINDER00000001427 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1953595:1956586:1 11/11 None
F52C12.2 ENSEMBL cdna:known chromosome:CEL140:IV:1953578:1959697:1 gene:F52C12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1955461-1956637(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52C12.2
Entrez Gene 176995 Entrez gene
SwissProt Q95X18 EMBL-EBI
WormBase CE31534 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250465_AT RNase L inhibitor protein-related at
CANINE:1605718_AT similar to CG4338-PA cfa
CANINE_2:CFA.565.1.A1_AT similar to CG4338-PA cfa
CANINE_2:CFAAFFX.29944.1.S1_S_AT similar to CG4338-PA cfa
DROSOPHILA_2:1640215_AT dm
DROSGENOME1:141215_AT dm
CHICKEN:GGA.12169.1.S1_AT similar to RIKEN cDNA 0610007P22 gga
U133_X3P:HS.134846.0.S1_3P_S_AT hypothetical protein MGC24381 hs
U133_X3P:HS.101516.1.A2_3P_AT hypothetical protein MGC24381 hs
HG-U133A_2:213104_AT hypothetical protein MGC24381 hs
HG-U133_PLUS_2:213104_AT hypothetical protein MGC24381 hs
HG-U133A:213104_AT hypothetical protein MGC24381 hs
HG-U133A_2:213105_S_AT hypothetical protein MGC24381 hs
HG-U133_PLUS_2:213105_S_AT hypothetical protein MGC24381 hs
HG-U133A:213105_S_AT hypothetical protein MGC24381 hs
HG-U133A_2:214067_AT hypothetical protein MGC24381 hs
HG-FOCUS:214067_AT hypothetical protein MGC24381 hs
HG-U133_PLUS_2:214067_AT hypothetical protein MGC24381 hs
HG-U133A:214067_AT hypothetical protein MGC24381 hs
HG-U95AV2:41116_AT hypothetical protein MGC24381 hs
HG-U133A_2:221993_S_AT Hypothetical protein MGC24381 hs
HG-U133_PLUS_2:221993_S_AT Hypothetical protein MGC24381 hs
HG-U133A:221993_S_AT Hypothetical protein MGC24381 hs
HG-U95E:78428_AT Hypothetical protein MGC24381 hs
U133_X3P:HS.134846.1.S1_3P_A_AT Hypothetical protein MGC24381 hs
MOUSE430A_2:1431132_X_AT RIKEN cDNA 0610007P22 gene mm
MOUSE430_2:1431132_X_AT RIKEN cDNA 0610007P22 gene mm
MOE430A:1431132_X_AT RIKEN cDNA 0610007P22 gene mm
MOUSE430A_2:1437969_S_AT RIKEN cDNA 0610007P22 gene mm
MOUSE430_2:1437969_S_AT RIKEN cDNA 0610007P22 gene mm
MOE430A:1437969_S_AT RIKEN cDNA 0610007P22 gene mm
MU19KSUBA:TC16807_AT RIKEN cDNA 0610007P22 gene, mRNA (cDNA clone MGC:48205 IMAGE:1516275) mm
MU19KSUBB:TC27271_AT RIKEN cDNA 0610007P22 gene, mRNA (cDNA clone MGC:48205 IMAGE:1516275) mm
MU19KSUBB:TC27271_G_AT RIKEN cDNA 0610007P22 gene, mRNA (cDNA clone MGC:48205 IMAGE:1516275) mm
RG-U34B:RC_AA849602_AT similar to RIKEN cDNA 0610007P22 rn
RAE230A:1373603_AT similar to RIKEN cDNA 0610007P22 rn
RAT230_2:1373603_AT similar to RIKEN cDNA 0610007P22 rn
Protein Similarities
Method ID Description E-Value
blast AAK70655 Hypothetical protein F52C12.2 [Caenorhabditis elegans] ref|NP_741332.1| F52C12.2 [Caenorhabditis elegans] 1.0E-120
blast H88640 protein F52C12.2 [imported] - Caenorhabditis elegans 1.0E-119
blast CAE74694 Hypothetical protein CBG22508 [Caenorhabditis briggsae] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR007177 EMBL-EBI Protein of unknown function DUF367 1.1E-68
Pfam IPR007209 EMBL-EBI Possible metal-binding region in RNase L inhibitor, RLI 1.8E-14
Sequence
Target Sequence 
>C. ELEGANS:175208_S_AT
gcggcttgtgatacaccggaagacgtgattcgagcacaaaatgagtatttggagagaatc
gataaggaacgggagcaacattcccgggatattgatctaccgccgagtggtagtgatgaa
gaatatgaggatgaggaagaagtggaagaattgaagaaataaaatctccccattcactgc
cgccgagcttcatcaatttctgcacattgtcatttttcgttggattttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGGCTTGTGATACACCGGAAGACG 259 293 13 Antisense
ACACCGGAAGACGTGATTCGAGCAC 201 109 25 Antisense
GGAAGACGTGATTCGAGCACAAAAT 86 531 30 Antisense
AATCGATAAGGAACGGGAGCAACAT 209 141 69 Antisense
GGAGCAACATTCCCGGGATATTGAT 107 521 84 Antisense
TCCCGGGATATTGATCTACCGCCGA 211 597 94 Antisense
GATATTGATCTACCGCCGAGTGGTA 534 425 100 Antisense
CCGCCGAGTGGTAGTGATGAAGAAT 241 263 112 Antisense
CCGAGCTTCATCAATTTCTGCACAT 251 263 195 Antisense
TCTGCACATTGTCATTTTTCGTTGG 197 609 211 Antisense
CATTGTCATTTTTCGTTGGATTTTT 115 217 217 Antisense
Sequence Source Affymetrix Proprietary Database