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[175207_at]

Description AV183136_rc /REP_DB=TREMBL Accession /GB=AV183136 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk647a4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 82      6grp_total > 36      4grp_total > 31      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 386
1 2 3 4 range
A 584.2
(3)
P 		225.2
(-3)
P 		264
(-2.4)
P 		432.8
(0.5)
P 		359
B 395.9
(1.1)
P 		230.5
(-3)
P 		246.9
(-2.6)
P 		473
(3)
P 		243
C 611
(3)
P 		328.9
(-3)
P 		332.6
(-2.9)
P 		341
(-2.7)
P 		282
avr 530.4
(3) 		261.5
(-3) 		281.2
(-2.6) 		415.6
(0.4) 		269

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 240
1 2 3 4 5 6 range
A 437.2
(2.5)
P 		455.9
(3)
P 		295.6
(-1.3)
P 		232.9
(-3)
P 		305.9
(-1)
P 		423.1
(2.1)
P 		223
B 411.3
(1.7)
P 		445
(3)
P 		292.2
(-3)
P 		314.8
(-2.1)
P 		306.1
(-2.5)
P 		435
(2.6)
P 		153
C 439.2
(2.2)
P 		472.9
(3)
P 		406.6
(1.3)
P 		233.6
(-3)
P 		249.4
(-2.6)
P 		356.4
(0.1)
P 		239
avr 429.2
(2.1) 		457.9
(3) 		331.5
(-0.8) 		260.4
(-3) 		287.1
(-2.2) 		404.8
(1.4) 		198
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 212.7
(3)
P 		48.9
(-3)
P 		69
(-2.3)
P 		63.4
(-2.5)
P 		164
B 126.2
(3)
P 		56.9
(-3)
P 		57.2
(-3)
P 		100.8
(0.8)
P 		69
C 202.3
(3)
P 		94.6
(-1.5)
P 		115.9
(-0.6)
P 		57.5
(-3)
P 		145
avr 180.4
(3) 		66.8
(-3) 		80.7
(-2.3) 		73.9
(-2.6) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 80.6
(-1.7)
P 		162.1
(3)
P 		64.4
(-2.7)
P 		59.1
(-3)
P 		92.3
(-1.1)
P 		103
(-0.4)
P 		103
B 143.1
(1.7)
P 		148.1
(2.1)
P 		71
(-3)
P 		83.4
(-2.2)
P 		124.4
(0.5)
P 		162.2
(3)
P 		91
C 162.8
(3)
P 		144.3
(2)
P 		103.5
(-0.1)
P 		47
(-3)
P 		80.7
(-1.3)
P 		119.3
(0.7)
P 		116
avr 128.8
(1.5) 		151.5
(3) 		79.6
(-1.9) 		63.2
(-3) 		99.1
(-0.6) 		128.2
(1.4) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175207_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22364
Sequence Type Exemplar sequence
Representative Public ID AV183136 NCBI
Target Description AV183136_rc /REP_DB=TREMBL Accession /GB=AV183136 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk647a4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171794(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171794 NCBI Caenorhabditis elegans Oxysterol Binding protein (OSBP) Related family member (obr-3) (obr-3) mRNA, complete cds. 11/11 A B 
ZK1086.1a ENSEMBL cdna:known chromosome:CEL140:X:13798145:13809778:-1 gene:ZK1086.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171795 1/11 Cross Hyb Matching Probes A B 
SNAP00000043455 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043459 1/11 Cross Hyb Matching Probes None
ZK1086.1b 1/11 Cross Hyb Matching Probes A B 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181495 2 1 NM_171794 175207_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13798326-13799205(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK1086.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD44120 Hypothetical protein ZK1086.1a [Caenorhabditis elegans] emb|CAA94223.2| Hypothetical protein ZK1086.1a [Caenorhabditis elegans] ref|NP_741923.1| Oxysterol Binding protein (OSBP) Related family member (obr-3) [Caenorhabditis elegans] 0.0
blast CAD44161 Hypothetical protein ZK1086.1b [Caenorhabditis elegans] ref|NP_741924.1| Oxysterol Binding protein (OSBP) Related family member (obr-3) [Caenorhabditis elegans] 0.0
blast CAE63081 Hypothetical protein CBG07370 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000648 EMBL-EBI Oxysterol-binding protein 3.3E-61
Pfam IPR001849 EMBL-EBI Pleckstrin-like 7.2E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741923.1 1 707-729
ZK1086.1a 1 707-729
Sequence
Target Sequence 
>C. ELEGANS:175207_AT
gagcgtatcaaggaaatggagcgcaaatttgaattggctattcgcagaatggaagcagcc
aacgaaagacaatcgtcccgaacgttgaacgctatccagtcaactctgctcttcgttttt
gttgtaacctcggtagttcaatctattttcatgttcttcatgcttcgcaagtgatctgta
tcaaatattaaatattttgacttgtatattaatattattcaatgaattatttgtattttg
ttcctgtcaatttgcttattttgctagtttcggttcaactcatcgtgattttttgttttc
atttcctctgaatcctagtccaaactctttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCGTATCAAGGAAATGGAGCGCA 123 387 126 Antisense
ATGCTTCGCAAGTGATCTGTATCAA 567 43 285 Antisense
GAATTATTTGTATTTTGTTCCTGTC 469 325 349 Antisense
GTATTTTGTTCCTGTCAATTTGCTT 483 451 358 Antisense
TGTTCCTGTCAATTTGCTTATTTTG 217 563 364 Antisense
TGCTTATTTTGCTAGTTTCGGTTCA 208 579 378 Antisense
GCTAGTTTCGGTTCAACTCATCGTG 48 303 388 Antisense
GGTTCAACTCATCGTGATTTTTTGT 373 507 397 Antisense
GATTTTTTGTTTTCATTTCCTCTGA 300 429 412 Antisense
CATTTCCTCTGAATCCTAGTCCAAA 522 215 425 Antisense
CTGAATCCTAGTCCAAACTCTTTCC 657 235 433 Antisense
Sequence Source Affymetrix Proprietary Database