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[175206_at]

Description AV198956_rc /REP_DB=TREMBL Accession /GB=AV198956 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk407a2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 74      6grp_total > 48      4grp_total > 07      6grp_highest_sub > Cu      6grp_cgc > 26      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 415
1 2 3 4 range
A 877.8
(3)
P 		463.1
(-3)
P 		632.7
(-0.5)
P 		783.7
(1.6)
P 		415
B 634.7
(3)
P 		617.4
(-3)
P 		632.2
(2.1)
P 		618.1
(-2.8)
P 		17
C 778.4
(-0.1)
P 		700.9
(-2.8)
P 		695.9
(-3)
P 		868.3
(3)
P 		172
avr 763.6
(3) 		593.8
(-3) 		653.6
(-0.9) 		756.7
(2.8) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 611
1 2 3 4 5 6 range
A 648.5
(-0.1)
P 		646.7
(-0.2)
P 		695.6
(3)
P 		626.3
(-1.6)
P 		604.3
(-3)
P 		663.5
(0.9)
P 		91
B 926.2
(2.4)
P 		816.8
(1.3)
P 		379
(-3)
P 		689.5
(0)
P 		587.6
(-1)
P 		990.4
(3)
P 		611
C 757.2
(2.7)
P 		645.6
(0.1)
P 		516.1
(-3)
P 		769.7
(3)
P 		612.6
(-0.7)
P 		737
(2.2)
P 		254
avr 777.3
(2.6) 		703
(0.9) 		530.2
(-3) 		695.2
(0.7) 		601.5
(-1.4) 		797
(3) 		267
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 319.6
(3)
P 		100.5
(-3)
P 		165.4
(-1.2)
P 		114.7
(-2.6)
P 		219
B 202.4
(3)
P 		152.5
(-1.2)
P 		146.5
(-1.7)
P 		131.7
(-3)
P 		71
C 257.7
(3)
P 		201.5
(-0)
P 		242.5
(2.2)
P 		146.4
(-3)
P 		111
avr 259.9
(3) 		151.5
(-2) 		184.8
(-0.5) 		130.9
(-3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 277
1 2 3 4 5 6 range
A 119.5
(-3)
P 		230
(3)
P 		151.5
(-1.3)
P 		158.9
(-0.9)
P 		182.4
(0.4)
P 		161.5
(-0.7)
P 		111
B 322.3
(2)
P 		271.9
(0.9)
P 		92
(-3)
P 		182.6
(-1)
P 		238.8
(0.2)
P 		369.3
(3)
P 		277
C 280.7
(3)
P 		197
(-0.4)
P 		131.4
(-3)
P 		154.8
(-2.1)
P 		198.2
(-0.3)
P 		246.7
(1.6)
P 		149
avr 240.8
(2.2) 		233
(1.8) 		125
(-3) 		165.4
(-1.2) 		206.5
(0.6) 		259.2
(3) 		134
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175206_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21404
Sequence Type Exemplar sequence
Representative Public ID AV198956 NCBI
Target Description AV198956_rc /REP_DB=TREMBL Accession /GB=AV198956 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk407a2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069369(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069369 NCBI Caenorhabditis elegans Nuclear Pore complex Protein family member (npp-1) (npp-1) mRNA, complete cds. 11/11 None
K07F5.13c ENSEMBL cdna:known chromosome:CEL140:IV:9858449:9862080:1 gene:K07F5.13 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177836 3 1 NM_069369 175206_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9861728-9862027(+) 100.0 100.0
Public Domain and Genome References
Ensembl K07F5.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54280 Hypothetical protein K07F5.13c [Caenorhabditis elegans] ref|NP_501770.1| Nuclear Pore complex Protein family member (npp-1) [Caenorhabditis elegans] 0.0
blast CAA94281 Hypothetical protein K07F5.13a [Caenorhabditis elegans] ref|NP_501772.1| Nuclear Pore complex Protein family member (npp-1) [Caenorhabditis elegans] 0.0
blast CAB54278 Hypothetical protein K07F5.13b [Caenorhabditis elegans] ref|NP_501771.1| Nuclear Pore complex Protein family member (npp-1) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:175206_AT
ttcagattttctcgtattaatttaaaaattcgctcatttcttttgtatcatcattatttt
ctttcaaactctgacaggtttctggttatttctgtttcgacctaagatgtgtggcagaaa
attgtttttaaaacttatacatattgagcaaaaaagctcgcttttttctatgttcgcctg
tcatcacgagtacattttttcataaaatatgcctcattcttggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAGATTTTCTCGTATTAATTTAA 475 685 45 Antisense
TTCGCTCATTTCTTTTGTATCATCA 565 697 73 Antisense
TGTATCATCATTATTTTCTTTCAAA 130 561 88 Antisense
ATTTTCTTTCAAACTCTGACAGGTT 583 13 100 Antisense
AACTCTGACAGGTTTCTGGTTATTT 330 141 111 Antisense
TCTGGTTATTTCTGTTTCGACCTAA 269 605 125 Antisense
GTTTCGACCTAAGATGTGTGGCAGA 449 443 138 Antisense
AAAAGCTCGCTTTTTTCTATGTTCG 90 133 196 Antisense
TTTCTATGTTCGCCTGTCATCACGA 57 673 209 Antisense
GTCATCACGAGTACATTTTTTCATA 505 467 224 Antisense
TCATAAAATATGCCTCATTCTTGGT 60 621 244 Antisense
Sequence Source Affymetrix Proprietary Database