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[175205_s_at]

Description AU116717_rc /REP_DB=TREMBL Accession /GB=AU116717 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk748b3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 93      6grp_total > 87      4grp_total > 28      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 190
1 2 3 4 range
A 241.8
(-1.8)
P 		286.6
(1.4)
P 		224.9
(-3)
P 		308.8
(3)
P 		84
B 297.7
(3)
P 		225.7
(-0.3)
P 		165.5
(-3)
P 		228.9
(-0.1)
P 		132
C 256.2
(-0.6)
P 		263.7
(-0.3)
P 		187.8
(-3)
P 		355.6
(3)
P 		168
avr 265.2
(1.1) 		258.7
(0.8) 		192.7
(-3) 		297.8
(3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 530
1 2 3 4 5 6 range
A 309.4
(-1)
P 		193
(-3)
P 		283.2
(-1.4)
P 		254
(-1.9)
P 		463.7
(1.7)
P 		540.2
(3)
P 		347
B 294.6
(-3)
P 		303.3
(-2.9)
P 		389.1
(-1.4)
P 		377.1
(-1.6)
P 		514.1
(0.7)
P 		648.1
(3)
P 		354
C 250.8
(-2.4)
P 		294.2
(-1.9)
P 		197.5
(-3)
P 		354.1
(-1.2)
P 		273.5
(-2.1)
P 		722.7
(3)
P 		525
avr 284.9
(-2.7) 		263.5
(-3) 		289.9
(-2.6) 		328.4
(-2) 		417.1
(-0.5) 		637
(3) 		374
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 88
(3)
P 		62.2
(-0.6)
P 		58.8
(-1.1)
P 		45.2
(-3)
P 		43
B 94.9
(3)
P 		55.7
(-1.2)
P 		38.3
(-3)
P 		48.8
(-1.9)
P 		57
C 84.8
(3)
P 		75.8
(0.8)
P 		65.5
(-1.7)
P 		60
(-3)
P 		25
avr 89.2
(3) 		64.6
(-0.9) 		54.2
(-2.5) 		51.3
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 57
(-3)
P 		68.6
(-2.2)
P 		61.7
(-2.7)
P 		64.4
(-2.5)
P 		139.9
(3)
P 		131.5
(2.4)
P 		83
B 102.5
(-2.7)
P 		101
(-2.7)
P 		94.5
(-3)
P 		99.9
(-2.8)
P 		208.9
(1.7)
P 		241.7
(3)
P 		147
C 92.9
(-1.7)
P 		89.8
(-1.8)
P 		50.3
(-3)
P 		71.2
(-2.3)
P 		88.5
(-1.8)
P 		241.9
(3)
P 		192
avr 84.1
(-2.3) 		86.5
(-2.2) 		68.8
(-3) 		78.5
(-2.6) 		145.8
(0.4) 		205
(3) 		136
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175205_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21361
Sequence Type Exemplar sequence
Representative Public ID AU116717 NCBI
Target Description AU116717_rc /REP_DB=TREMBL Accession /GB=AU116717 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk748b3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069536(11), NM_069535(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069536 NCBI Caenorhabditis elegans F01D4.5a (F01D4.5) mRNA, complete cds. 11/11 A 
NM_069535 NCBI Caenorhabditis elegans F01D4.5b (F01D4.5) mRNA, complete cds. 11/11 None
GENEFINDER00000032320 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10482628:10483620:-1 11/11 None
F01D4.5a ENSEMBL cdna:known chromosome:CEL140:IV:10482658:10483620:-1 gene:F01D4.5 11/11 A 
F01D4.5b ENSEMBL cdna:known chromosome:CEL140:IV:10482667:10483640:-1 gene:F01D4.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10482682-10483012(-) 100.0 100.0
Public Domain and Genome References
Ensembl F01D4.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02880 Hypothetical protein F01D4.5a [Caenorhabditis elegans] ref|NP_501937.1| F01D4.5a [Caenorhabditis elegans] 1.0E-108
blast CAC70083 Hypothetical protein F01D4.5b [Caenorhabditis elegans] ref|NP_501936.1| F01D4.5b [Caenorhabditis elegans] 1.0E-105
blast CAB02880 Hypothetical protein F01D4.5a [Caenorhabditis elegans] ref|NP_501937.1| F01D4.5a [Caenorhabditis elegans] 3.0E-97
blast CAC70083 Hypothetical protein F01D4.5b [Caenorhabditis elegans] ref|NP_501936.1| F01D4.5b [Caenorhabditis elegans] 5.0E-97
blast CAE63797 Hypothetical protein CBG08339 [Caenorhabditis briggsae] 8.0E-82
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000032320 1 211-233
Sequence
Target Sequence 
>C. ELEGANS:175205_S_AT
ggctcatgtgttttatgggctccaaatgtgcatcttcacggcaatcagctaacaaatctg
gataatcaaatcgatattttctggtctcaaacgtgcatagtttgccgcaaaactggtgcc
gcaatttctgtacaaaataagaaaaacacgttcattcattacccatgtgccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTCATGTGTTTTATGGGCTCCAA 486 539 17 Antisense
GGCTCCAAATGTGCATCTTCACGGC 660 539 34 Antisense
GCATCTTCACGGCAATCAGCTAACA 130 309 46 Antisense
ACGGCAATCAGCTAACAAATCTGGA 592 93 54 Antisense
AATCGATATTTTCTGGTCTCAAACG 487 167 85 Antisense
TTTTCTGGTCTCAAACGTGCATAGT 97 677 93 Antisense
AAACGTGCATAGTTTGCCGCAAAAC 508 127 105 Antisense
GTTTGCCGCAAAACTGGTGCCGCAA 685 449 116 Antisense
ACTGGTGCCGCAATTTCTGTACAAA 272 97 128 Antisense
AAAAACACGTTCATTCATTACCCAT 493 127 158 Antisense
GTTCATTCATTACCCATGTGCCAAA 670 443 166 Antisense
Sequence Source Affymetrix Proprietary Database