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[175204_at]

Description AU113592_rc /REP_DB=TREMBL Accession /GB=AU113592 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk709d8 : 3prime end, single read.
Cluster 6grp_total > 10      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 18.8
(-2.3)
A 		151.2
(3)
P 		135.2
(2.4)
P 		1.3
(-3)
A 		150
B 3.4
(-2.9)
A 		119.4
(2.5)
P 		130.1
(3)
P 		0.7
(-3)
A 		129
C 1.2
(-3)
A 		144
(2.3)
P 		164.1
(3)
P 		2.1
(-3)
A 		163
avr 7.8
(-2.7) 		138.2
(2.8) 		143.1
(3) 		1.4
(-3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 5.1
(-3)
A 		60.4
(3)
P 		36.3
(0.4)
A 		22.6
(-1.1)
A 		31.2
(-0.2)
A 		30.1
(-0.3)
A 		55
B 2.8
(-3)
A 		56.4
(2.1)
P 		65.4
(3)
P 		37.2
(0.3)
A 		43
(0.9)
P 		28.5
(-0.5)
A 		63
C 38.6
(-1.2)
A 		67.9
(3)
P 		41.2
(-0.8)
P 		34.7
(-1.8)
A 		33.4
(-2)
A 		26.2
(-3)
A 		42
avr 15.5
(-3) 		61.6
(3) 		47.6
(1.2) 		31.5
(-0.9) 		35.9
(-0.3) 		28.3
(-1.3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 6.8
(-1.9)
A 		32.8
(2.6)
P 		35.3
(3)
P 		0.2
(-3)
A 		35
B 1.1
(-2.8)
A 		29.5
(2.9)
P 		30.1
(3)
P 		0.2
(-3)
A 		30
C 0.4
(-3)
A 		41.4
(1.3)
P 		57.2
(3)
P 		0.4
(-3)
A 		57
avr 2.8
(-2.6) 		34.6
(2.1) 		40.9
(3) 		0.3
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 0.9
(-3)
A 		21.5
(3)
P 		7.9
(-1)
A 		5.7
(-1.6)
A 		9.4
(-0.5)
A 		7.3
(-1.1)
A 		21
B 1
(-3)
A 		18.8
(3)
P 		15.9
(2)
P 		9.9
(0)
A 		17.5
(2.6)
P 		10.6
(0.2)
A 		18
C 14.3
(0.2)
A 		20.7
(3)
P 		10.5
(-1.5)
P 		7
(-3)
A 		10.8
(-1.3)
A 		8.8
(-2.2)
A 		14
avr 5.4
(-3) 		20.3
(3) 		11.4
(-0.6) 		7.5
(-2.2) 		12.6
(-0.1) 		8.9
(-1.6) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175204_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21358
Sequence Type Exemplar sequence
Representative Public ID AU113592 NCBI
Target Description AU113592_rc /REP_DB=TREMBL Accession /GB=AU113592 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk709d8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069863(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069863 NCBI Caenorhabditis elegans ZK829.3 (ZK829.3) mRNA, complete cds. 11/11 A 
ZK829.3 ENSEMBL cdna:known chromosome:CEL140:IV:11943284:11945690:-1 gene:ZK829.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012760 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11943366-11943666(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK829.3
Entrez Gene 178128 Entrez gene
SwissProt Q23620 EMBL-EBI
WormBase CE27561 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98073 Hypothetical protein ZK829.3 [Caenorhabditis elegans] ref|NP_502264.1| ZK829.3 [Caenorhabditis elegans] 0.0
blast CAE62151 Hypothetical protein CBG06197 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502264.1 1 12-29
ZK829.3 1 12-29
Sequence
Target Sequence 
>C. ELEGANS:175204_AT
tccatctacataccgaaagttgttcaatttgataatttgagtatttacgaggatgcactt
ggaaggtgtacatcctacaaatcgacaattgaagaccgacaaaaactgatgaagttcgag
ttcgaattagagaaccgagtgtcttctgaagtttgtgaaatcgaactaatgcgtgacgat
ttcaaatgtcgcgtcgcaatggactatagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCATCTACATACCGAAAGTTGTTC 153 591 13 Antisense
GTATTTACGAGGATGCACTTGGAAG 204 453 53 Antisense
GCACTTGGAAGGTGTACATCCTACA 637 313 67 Antisense
GTACATCCTACAAATCGACAATTGA 290 461 80 Antisense
GAAGACCGACAAAAACTGATGAAGT 160 339 103 Antisense
GAGAACCGAGTGTCTTCTGAAGTTT 440 391 142 Antisense
GTGTCTTCTGAAGTTTGTGAAATCG 570 483 151 Antisense
TGTGAAATCGAACTAATGCGTGACG 532 545 166 Antisense
ATGCGTGACGATTTCAAATGTCGCG 649 41 181 Antisense
ACGATTTCAAATGTCGCGTCGCAAT 394 93 188 Antisense
ATGTCGCGTCGCAATGGACTATAGT 15 49 198 Antisense
Sequence Source Affymetrix Proprietary Database