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[175202_at]

Description AU114019_rc /REP_DB=TREMBL Accession /GB=AU114019 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk714c3 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 97      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_total > 87      4grp_total > 03      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 82.3
(-0.4)
P 		54.7
(-3)
P 		78.7
(-0.8)
P 		118.9
(3)
P 		64
B 84.8
(0.9)
P 		84.4
(0.8)
P 		49.4
(-3)
P 		104.3
(3)
P 		55
C 71.2
(-3)
P 		83
(-2.3)
P 		76.8
(-2.7)
P 		172.9
(3)
P 		102
avr 79.4
(-2) 		74
(-2.5) 		68.3
(-3) 		132
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 332
1 2 3 4 5 6 range
A 78
(-3)
A 		88.9
(-2.7)
P 		128.3
(-1.5)
P 		159.5
(-0.6)
P 		161.9
(-0.5)
P 		278
(3)
P 		200
B 69
(-3)
P 		89.3
(-2.5)
P 		80.7
(-2.7)
P 		143.3
(-1.3)
P 		265.7
(1.4)
P 		336.3
(3)
P 		267
C 52.5
(-3)
P 		82.9
(-2.5)
P 		86.9
(-2.4)
P 		125.9
(-1.7)
P 		205.1
(-0.2)
P 		384.9
(3)
P 		332
avr 66.5
(-3) 		87
(-2.5) 		98.6
(-2.3) 		142.9
(-1.3) 		210.9
(0.2) 		333.1
(3) 		267
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 30
(3)
P 		11.9
(-3)
P 		20.6
(-0.1)
P 		17.4
(-1.2)
P 		18
B 27.1
(3)
P 		20.9
(0.6)
P 		11.5
(-3)
P 		22.2
(1.1)
P 		16
C 23.6
(-3)
P 		23.9
(-2.7)
P 		26.8
(0.5)
P 		29.1
(3)
P 		6
avr 26.9
(3) 		18.9
(-3) 		19.6
(-2.5) 		22.9
(0) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 14.4
(-3)
A 		31.6
(-1.1)
P 		27.9
(-1.5)
P 		40.4
(-0.1)
P 		48.9
(0.9)
P 		67.7
(3)
P 		53
B 24
(-2.8)
P 		29.7
(-2.4)
P 		19.6
(-3)
P 		37.9
(-2)
P 		108
(2)
P 		125.4
(3)
P 		106
C 19.5
(-3)
P 		25.3
(-2.7)
P 		22.1
(-2.9)
P 		25.3
(-2.7)
P 		66.4
(-0.4)
P 		128.9
(3)
P 		109
avr 19.3
(-3) 		28.9
(-2.3) 		23.2
(-2.7) 		34.5
(-2) 		74.4
(0.8) 		107.3
(3) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175202_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21044
Sequence Type Exemplar sequence
Representative Public ID AU114019 NCBI
Target Description AU114019_rc /REP_DB=TREMBL Accession /GB=AU114019 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk714c3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AU114019
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AU114019 AU114019_rc /REP_DB=TREMBL Accession /GB=AU114019 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk714c3 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8626280-8626559(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175202_AT
aatgatggatactcgtccttgtcccatttgtggaactgatgtcgaaaatcgtttagacgt
tatgaactgccacgtcgatgagtgtattctgaaagtgcaaaacgatgacggacccgagtt
aatttgcgtttctgtggaaaataaatcaacgcagaaaccagaaagaccttctacgaaaaa
gcgaaaacttcaagagaagagaccaaaagcgaagaaaatggtgacaatcgactcattttg
gaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGATGGATACTCGTCCTTGTCCC 476 165 14 Antisense
TTGTCCCATTTGTGGAACTGATGTC 464 703 32 Antisense
AACTGATGTCGAAAATCGTTTAGAC 72 143 47 Antisense
TCGTTTAGACGTTATGAACTGCCAC 514 603 62 Antisense
TGAACTGCCACGTCGATGAGTGTAT 95 573 76 Antisense
GTCGATGAGTGTATTCTGAAAGTGC 168 473 87 Antisense
GTGCAAAACGATGACGGACCCGAGT 690 471 108 Antisense
GGACCCGAGTTAATTTGCGTTTCTG 396 519 123 Antisense
CGAGTTAATTTGCGTTTCTGTGGAA 347 239 128 Antisense
GCAGAAACCAGAAAGACCTTCTACG 9 311 164 Antisense
TGGTGACAATCGACTCATTTTGGAA 71 553 232 Antisense
Sequence Source Affymetrix Proprietary Database