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[175201_at]

Description AU115952_rc /REP_DB=TREMBL Accession /GB=AU115952 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk738g9 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 29      6grp_total > 29      4grp_total > 02      6grp_high1_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 33.4
(-2.6)
A 		27
(-3)
A 		41.2
(-2.1)
A 		121.7
(3)
P 		95
B 26.2
(-1.7)
A 		44.5
(0.6)
M 		15.5
(-3)
A 		64
(3)
P 		49
C 33.6
(-2)
A 		21.8
(-3)
A 		23.5
(-2.9)
A 		90.4
(3)
P 		69
avr 31.1
(-2.6) 		31.1
(-2.6) 		26.7
(-3) 		92
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 72.5
(3)
P 		2.4
(-3)
A 		33.5
(-0.3)
P 		37.5
(0)
A 		41.5
(0.3)
A 		20.9
(-1.4)
A 		70
B 46
(-0.4)
P 		66.6
(3)
M 		40.5
(-1.3)
P 		30.2
(-3)
P 		39.5
(-1.5)
P 		39.9
(-1.4)
P 		36
C 10.3
(-3)
A 		43.6
(2.8)
P 		24.1
(-0.6)
A 		38.2
(1.9)
A 		44.8
(3)
P 		33.9
(1.1)
P 		35
avr 42.9
(3) 		37.5
(0.1) 		32.7
(-2.4) 		35.3
(-1) 		41.9
(2.5) 		31.6
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 12.2
(0.2)
A 		5.9
(-3)
A 		10.8
(-0.5)
A 		17.8
(3)
P 		12
B 8.4
(-0.1)
A 		11
(1.4)
M 		3.6
(-3)
A 		13.6
(3)
P 		10
C 11.1
(0.2)
A 		6.3
(-3)
A 		8.2
(-1.7)
A 		15.2
(3)
P 		9
avr 10.6
(-0.7) 		7.7
(-2.9) 		7.5
(-3) 		15.5
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 13.4
(3)
P 		0.8
(-3)
A 		7.3
(0.1)
P 		9.5
(1.1)
A 		12.5
(2.6)
A 		5.1
(-1)
A 		13
B 16
(0.4)
P 		22.2
(3)
M 		9.8
(-2.2)
P 		8
(-3)
P 		16
(0.4)
P 		14.9
(-0.1)
P 		14
C 3.8
(-3)
A 		13.3
(2.3)
P 		6.1
(-1.7)
A 		7.7
(-0.8)
A 		14.5
(3)
P 		11.4
(1.3)
P 		11
avr 11.1
(0.1) 		12.1
(1) 		7.7
(-3) 		8.4
(-2.4) 		14.3
(3) 		10.5
(-0.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175201_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21974
Sequence Type Exemplar sequence
Representative Public ID AU115952 NCBI
Target Description AU115952_rc /REP_DB=TREMBL Accession /GB=AU115952 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk738g9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071002(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071002 NCBI Caenorhabditis elegans F16B3.2 (F16B3.2) mRNA, complete cds. 11/11 None
F16B3.2 ENSEMBL cdna:known chromosome:CEL140:V:1315285:1315740:1 gene:F16B3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1315294-1315730(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F16B3.2
Entrez Gene 178625 Entrez gene
SwissProt Q6EZH0 EMBL-EBI
WormBase CE36927 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:175201_AT
gtagtttgtctgatgctgttaatgaatagattcacgattgtaaactacaaattgtgtaca
agacaagtaacaatgccataaatacaaatgacaaagtacataaggaacccgtatttcgat
atctccattgattatgtgaataagaagaagagtactgtagtcgtttggcaatgtacgaag
acgcgtattctcgtgagccaaatggtgatgaaaaacagtcttctgagttacatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGTTTGTCTGATGCTGTTAATGA 680 455 28 Antisense
GAATAGATTCACGATTGTAAACTAC 187 327 51 Antisense
GACAAAGTACATAAGGAACCCGTAT 495 351 117 Antisense
AGGAACCCGTATTTCGATATCTCCA 352 53 130 Antisense
CCCGTATTTCGATATCTCCATTGAT 222 261 135 Antisense
GATATCTCCATTGATTATGTGAATA 53 427 145 Antisense
GAGTACTGTAGTCGTTTGGCAATGT 292 397 177 Antisense
CGTTTGGCAATGTACGAAGACGCGT 665 245 189 Antisense
CGAAGACGCGTATTCTCGTGAGCCA 117 253 203 Antisense
GCGTATTCTCGTGAGCCAAATGGTG 524 291 210 Antisense
GAAAAACAGTCTTCTGAGTTACATT 250 353 237 Antisense
Sequence Source Affymetrix Proprietary Database