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[175200_s_at]

Description AV182363_rc /REP_DB=TREMBL Accession /GB=AV182363 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk636g5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 04      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 41      6grp_total > 24      4grp_total > 61      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 577
1 2 3 4 range
A 1154.9
(3)
P 		897.8
(-0.8)
P 		935.5
(-0.3)
P 		750.9
(-3)
P 		404
B 1038
(1.3)
P 		1097.1
(2.3)
P 		1139.9
(3)
P 		785.1
(-3)
P 		355
C 1127.9
(3)
P 		930.2
(0.8)
P 		1086
(2.5)
P 		577.8
(-3)
P 		550
avr 1106.9
(3) 		975
(1) 		1053.8
(2.2) 		704.6
(-3) 		402

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 899
1 2 3 4 5 6 range
A 802.4
(0)
P 		1036.6
(3)
P 		701.4
(-1.2)
P 		639.3
(-2)
P 		560.9
(-3)
P 		608.7
(-2.4)
P 		476
B 848
(1.7)
P 		881.6
(2.1)
P 		953.6
(3)
P 		695.5
(-0.2)
P 		728.9
(0.2)
P 		465.7
(-3)
P 		488
C 1335.9
(3)
P 		810.4
(-0.5)
P 		872
(-0.1)
P 		549.5
(-2.2)
P 		853.7
(-0.2)
P 		436.8
(-3)
P 		899
avr 995.4
(3) 		909.5
(2) 		842.3
(1.1) 		628.1
(-1.5) 		714.5
(-0.4) 		503.7
(-3) 		492
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 323
1 2 3 4 range
A 420.5
(3)
P 		194.9
(-1.4)
P 		244.5
(-0.4)
P 		109.9
(-3)
P 		311
B 331
(3)
P 		271
(0.8)
P 		264.1
(0.5)
P 		167.3
(-3)
P 		164
C 373.4
(2.9)
P 		267.4
(0.6)
P 		378.5
(3)
P 		97.4
(-3)
P 		281
avr 375
(3) 		244.4
(-0.1) 		295.7
(1.1) 		124.9
(-3) 		250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 385
1 2 3 4 5 6 range
A 147.9
(-3)
P 		368.7
(3)
P 		152.8
(-2.9)
P 		162.1
(-2.6)
P 		169.2
(-2.4)
P 		148.2
(-3)
P 		221
B 295.1
(3)
P 		293.4
(2.9)
P 		231.6
(-0.2)
P 		184.2
(-2.5)
P 		296.1
(3)
P 		173.6
(-3)
P 		123
C 495.2
(3)
P 		247.3
(-0.9)
P 		222
(-1.3)
P 		110.5
(-3)
P 		276.2
(-0.4)
P 		146.2
(-2.4)
P 		385
avr 312.7
(3) 		303.1
(2.6) 		202.1
(-1.1) 		152.3
(-3) 		247.2
(0.5) 		156
(-2.9) 		160
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175200_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21967
Sequence Type Exemplar sequence
Representative Public ID AV182363 NCBI
Target Description AV182363_rc /REP_DB=TREMBL Accession /GB=AV182363 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk636g5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182321(11), NM_071332(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182321 NCBI Caenorhabditis elegans Y45G12B.1c (Y45G12B.1) mRNA, complete cds. 11/11 None
NM_071332 NCBI Caenorhabditis elegans Y45G12B.1a (Y45G12B.1) mRNA, complete cds. 11/11 A 
Y45G12B.1c.2 ENSEMBL cdna:known chromosome:CEL140:V:2698797:2703792:1 gene:Y45G12B.1 11/11 None
Y45G12B.1c.1 ENSEMBL cdna:known chromosome:CEL140:V:2698799:2703792:1 gene:Y45G12B.1 11/11 None
Y45G12B.1a ENSEMBL cdna:known chromosome:CEL140:V:2698805:2706851:1 gene:Y45G12B.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178735 3 2 NM_071332 175200_s_at (11), 191639_s_at (11)
NM_182321 175200_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2703428-2703708(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y45G12B.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO25977 Hypothetical protein Y45G12B.1c [Caenorhabditis elegans] ref|NP_872121.1| Y45G12B.1c [Caenorhabditis elegans] 0.0
blast AAF60575 Hypothetical protein Y45G12B.1a [Caenorhabditis elegans] ref|NP_503733.1| Y45G12B.1a [Caenorhabditis elegans] 0.0
blast CAE62536 Hypothetical protein CBG06645 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001041 EMBL-EBI Ferredoxin 9.8E-12
Pfam IPR006656 EMBL-EBI Molybdopterin oxidoreductase 1.0E-126
Pfam IPR006656 EMBL-EBI Molybdopterin oxidoreductase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:175200_S_AT
tcaacgatgggccggtcaagctggagctctggatgttggatacaaagcaggcactgccgg
gatccgaaagacgccgatcaagttcttgtaccttctgggagccgacgaggggaaggtcac
caaggcgaaccttgatccatcggcatttgtggtctatcagggacatcatggagacgctgg
agccgagatggctgatgttgtactgccaggagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACGATGGGCCGGTCAAGCTGGA 263 631 19 Antisense
GCTGGAGCTCTGGATGTTGGATACA 367 295 38 Antisense
GCACTGCCGGGATCCGAAAGACGCC 5 317 69 Antisense
GACGCCGATCAAGTTCTTGTACCTT 707 377 88 Antisense
TACCTTCTGGGAGCCGACGAGGGGA 651 643 107 Antisense
GACGAGGGGAAGGTCACCAAGGCGA 661 373 122 Antisense
CCAAGGCGAACCTTGATCCATCGGC 623 275 138 Antisense
GATCCATCGGCATTTGTGGTCTATC 638 415 152 Antisense
GGGACATCATGGAGACGCTGGAGCC 568 399 178 Antisense
GAGACGCTGGAGCCGAGATGGCTGA 685 393 189 Antisense
GGCTGATGTTGTACTGCCAGGAGCA 192 541 208 Antisense
Sequence Source Affymetrix Proprietary Database