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[175199_at]

Description AV183628_rc /REP_DB=TREMBL Accession /GB=AV183628 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk654a9 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 72      6grp_total > 71      4grp_total > 31      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 64
(0.7)
P 		33.4
(-3)
A 		37.6
(-2.5)
A 		82.8
(3)
A 		49
B 64.8
(3)
P 		60.1
(2.3)
A 		35.9
(-1.6)
A 		27.2
(-3)
A 		38
C 61.8
(2.3)
P 		42.4
(-3)
A 		64.4
(3)
M 		51.3
(-0.6)
P 		22
avr 63.5
(3) 		45.3
(-3) 		46
(-2.8) 		53.8
(-0.2) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 5.9
(-3)
A 		90.8
(3)
P 		88.9
(2.9)
P 		89.2
(2.9)
P 		75.5
(1.9)
P 		22.5
(-1.8)
A 		85
B 53
(-0.8)
M 		35.5
(-3)
P 		82.3
(3)
P 		44
(-1.9)
A 		44.5
(-1.8)
P 		59.9
(0.1)
P 		47
C 51.5
(-2)
P 		73.3
(-0.5)
P 		56.7
(-1.6)
P 		126.9
(3)
A 		36.2
(-3)
A 		43.7
(-2.5)
A 		91
avr 36.8
(-3) 		66.5
(0.6) 		76
(1.7) 		86.7
(3) 		52.1
(-1.2) 		42
(-2.4) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 23.3
(3)
P 		7.2
(-3)
A 		9.8
(-2)
A 		12.1
(-1.2)
A 		16
B 20.7
(3)
P 		14.8
(0.6)
A 		8.3
(-2)
A 		5.8
(-3)
A 		15
C 20.5
(2.2)
P 		12.2
(-1.5)
A 		22.4
(3)
M 		8.7
(-3)
P 		14
avr 21.5
(3) 		11.4
(-1.8) 		13.5
(-0.8) 		8.9
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 1.1
(-3)
A 		32.3
(3)
P 		19.4
(0.5)
P 		22.6
(1.1)
P 		22.8
(1.2)
P 		5.5
(-2.2)
A 		31
B 18.4
(0.8)
M 		11.8
(-2.9)
P 		20
(1.7)
P 		11.7
(-3)
A 		18.1
(0.6)
P 		22.3
(3)
P 		11
C 19.1
(0.2)
P 		22.4
(1.7)
P 		14.4
(-1.8)
P 		25.5
(3)
A 		11.7
(-3)
A 		14.6
(-1.7)
A 		14
avr 12.9
(-3) 		22.2
(3) 		17.9
(0.2) 		19.9
(1.5) 		17.5
(-0) 		14.1
(-2.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175199_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22023
Sequence Type Exemplar sequence
Representative Public ID AV183628 NCBI
Target Description AV183628_rc /REP_DB=TREMBL Accession /GB=AV183628 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk654a9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071120(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071120 NCBI Caenorhabditis elegans T10B5.4 (T10B5.4) mRNA, complete cds. 9/11 None
T10B5.4 ENSEMBL cdna:known chromosome:CEL140:V:1870429:1871577:-1 gene:T10B5.4 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014352 7/11 Cross Hyb Matching Probes None
GENEFINDER00000014361 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1870317-1870878(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10B5.4
Entrez Gene 178668 Entrez gene
SwissProt O76405 EMBL-EBI
WormBase CE28254 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8080 N-acetyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68398 Hypothetical protein T10B5.4 [Caenorhabditis elegans] ref|NP_503521.1| T10B5.4 [Caenorhabditis elegans] 1.0E-123
blast CAE74145 Hypothetical protein CBG21816 [Caenorhabditis briggsae] 1.0E-75
blast T33228 hypothetical protein T10B5.4 - Caenorhabditis elegans 5.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR000182 EMBL-EBI GCN5-related N-acetyltransferase 7.7E-9
Sequence
Target Sequence 
>C. ELEGANS:175199_AT
ttcagcaaggatatgtggtctcacaacacttcgcgaaatgccattttcctgttttcgaaa
caatggcgacgtggttttcgagaacctcgtcgacggtggagtcagcgggaaactaatggg
gaagaagctagaaaaacatgcaaatgaggaggaagaggacgaccttcgatagcgatagca
actcaaattaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAGCAAGGATATGTGGTCTCACA 27 687 39 Antisense
TATGTGGTCTCACAACACTTCGCGA 106 655 50 Antisense
ACAACACTTCGCGAAATGCCATTTT 50 113 61 Antisense
GAAATGCCATTTTCCTGTTTTCGAA 526 361 73 Antisense
GTTTTCGAAACAATGGCGACGTGGT 544 293 89 Antisense
GGCGACGTGGTTTTCGAGAACCTCG 533 491 103 Antisense
TCGAGAACCTCGTCGACGGTGGAGT 671 599 116 Antisense
CCTCGTCGACGGTGGAGTCAGCGGG 460 259 123 Antisense
GGAGTCAGCGGGAAACTAATGGGGA 566 517 136 Antisense
GAGGACGACCTTCGATAGCGATAGC 384 403 193 Antisense
GATAGCGATAGCAACTCAAATTAAA 312 425 206 Antisense
Sequence Source Affymetrix Proprietary Database