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[175198_at]

Description AV177779_rc /REP_DB=TREMBL Accession /GB=AV177779 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk533f5 : 3prime end, single read.
Cluster 6grp_total > 51      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 30
(2.7)
A 		25.1
(1.6)
A 		4.5
(-3)
A 		31.3
(3)
A 		27
B 20.5
(3)
A 		9.4
(-2.1)
A 		7.4
(-3)
A 		19.9
(2.7)
A 		13
C 21.4
(-1)
A 		3
(-3)
A 		6.8
(-2.6)
A 		58.6
(3)
A 		56
avr 24
(0.5) 		12.5
(-1.8) 		6.2
(-3) 		36.6
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 48.6
(3)
A 		11.5
(-3)
A 		42.2
(2)
P 		31.6
(0.3)
M 		28.6
(-0.2)
P 		19.5
(-1.7)
A 		37
B 12.2
(-1.9)
A 		21.9
(-0.8)
A 		55.3
(3)
A 		27
(-0.2)
A 		16
(-1.4)
A 		2.1
(-3)
A 		53
C 3.4
(-2.8)
A 		34.2
(1.2)
A 		5.7
(-2.5)
A 		48.5
(3)
A 		8.3
(-2.2)
A 		2
(-3)
A 		47
avr 21.4
(-0.1) 		22.5
(0.2) 		34.4
(2.7) 		35.7
(3) 		17.6
(-0.9) 		7.9
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10.9
(3)
A 		5.4
(-0.4)
A 		1.2
(-3)
A 		4.6
(-0.9)
A 		10
B 6.5
(3)
A 		2.3
(-2.3)
A 		1.7
(-3)
A 		4.2
(0.1)
A 		5
C 7.1
(1.1)
A 		0.9
(-3)
A 		2.4
(-2)
A 		9.9
(3)
A 		9
avr 8.2
(3) 		2.9
(-2) 		1.8
(-3) 		6.2
(1.1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 9
(2.8)
A 		4.1
(-3)
A 		9.2
(3)
P 		8
(1.6)
M 		8.6
(2.3)
P 		4.8
(-2.2)
A 		5
B 4.2
(-1.4)
A 		7.3
(0.1)
A 		13.4
(3)
A 		7.1
(0)
A 		6.5
(-0.3)
A 		0.8
(-3)
A 		13
C 1.3
(-2.6)
A 		10.4
(3)
A 		1.5
(-2.5)
A 		9.8
(2.6)
A 		2.7
(-1.8)
A 		0.7
(-3)
A 		10
avr 4.8
(-0.4) 		7.3
(2) 		8
(2.7) 		8.3
(3) 		5.9
(0.7) 		2.1
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175198_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21586
Sequence Type Exemplar sequence
Representative Public ID AV177779 NCBI
Target Description AV177779_rc /REP_DB=TREMBL Accession /GB=AV177779 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk533f5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV177779
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV177779 AV177779_rc /REP_DB=TREMBL Accession /GB=AV177779 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk533f5 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028270 10/11 Negative Strand Matching Probes None
NM_001028269 9/11 Negative Strand Matching Probes None
SNAP00000044691 9/11 Negative Strand Matching Probes None
Y37E11B.1a 9/11 Negative Strand Matching Probes A 
Y37E11B.1b 10/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3580731-3581011(-) 87.14 100.0
Sequence
Target Sequence 
>C. ELEGANS:175198_AT
ttattcccattttccaagtatatatgtaaatatttattcatattttccaacacaaatcaa
tcaatatcatcatcatcatcattatctccatcaccggctcgcttctgattctcgtgcatc
agctgaacatgacgacggcacacggatcgagatgagaactgcttgaagcaataactgcac
ccgaatggcttcagattatcatgtttccgcaagtggatcttgaatggatcacttaaatcg
aaactcgcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATTCCCATTTTCCAAGTATATAT 342 679 13 Antisense
TATTTATTCATATTTTCCAACACAA 221 663 43 Antisense
TCGCTTCTGATTCTCGTGCATCAGC 222 601 111 Antisense
GATTCTCGTGCATCAGCTGAACATG 488 431 119 Antisense
GCTGAACATGACGACGGCACACGGA 431 295 134 Antisense
GACGACGGCACACGGATCGAGATGA 344 379 143 Antisense
GATCGAGATGAGAACTGCTTGAAGC 568 415 157 Antisense
TGCTTGAAGCAATAACTGCACCCGA 308 579 172 Antisense
AACTGCACCCGAATGGCTTCAGATT 19 143 185 Antisense
GGCTTCAGATTATCATGTTTCCGCA 51 539 199 Antisense
GGATCACTTAAATCGAAACTCGCGT 238 509 238 Antisense
Sequence Source Affymetrix Proprietary Database