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[175197_at]

Description AV178862_rc /REP_DB=TREMBL Accession /GB=AV178862 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk573a3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 18      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 40      6grp_total > 17      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 12      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 772
1 2 3 4 range
A 1085.9
(3)
P 		486.7
(-3)
P 		553.9
(-2.3)
P 		614.2
(-1.7)
P 		599
B 1095.7
(3)
P 		640.1
(-0.5)
P 		323.4
(-3)
P 		483.2
(-1.8)
P 		772
C 778.9
(3)
P 		684.8
(0.8)
P 		517.6
(-3)
P 		551.7
(-2.2)
P 		261
avr 986.8
(3) 		603.9
(-1.4) 		465
(-3) 		549.7
(-2) 		522

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1097
1 2 3 4 5 6 range
A 1036.1
(3)
P 		485.4
(-2.1)
P 		508.4
(-1.9)
P 		389.4
(-3)
P 		619.1
(-0.9)
P 		399
(-2.9)
P 		647
B 1319.7
(3)
P 		708.6
(-0.3)
P 		222.9
(-3)
P 		397.2
(-2)
P 		384.1
(-2.1)
P 		422.7
(-1.9)
P 		1097
C 987.5
(3)
P 		728.2
(0.9)
P 		443.4
(-1.4)
P 		242
(-3)
P 		455.1
(-1.3)
P 		498.7
(-0.9)
P 		746
avr 1114.4
(3) 		640.7
(-0.7) 		391.6
(-2.6) 		342.9
(-3) 		486.1
(-1.9) 		440.1
(-2.2) 		772
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 320
1 2 3 4 range
A 395.4
(3)
P 		105.6
(-2.7)
P 		144.8
(-1.9)
P 		89.9
(-3)
P 		306
B 349.4
(3)
P 		158.1
(-1.2)
P 		75
(-3)
P 		103
(-2.4)
P 		274
C 257.8
(3)
P 		196.9
(0.8)
P 		180.4
(0.2)
P 		93
(-3)
P 		165
avr 334.2
(3) 		153.5
(-1.5) 		133.4
(-2) 		95.3
(-3) 		239

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 411
1 2 3 4 5 6 range
A 191
(3)
P 		172.6
(1.8)
P 		110.7
(-2.1)
P 		98.8
(-2.9)
P 		186.8
(2.7)
P 		97.1
(-3)
P 		94
B 459.2
(3)
P 		235.9
(-0.3)
P 		54.1
(-3)
P 		105.2
(-2.2)
P 		156.1
(-1.5)
P 		157.6
(-1.5)
P 		405
C 366
(3)
P 		222.2
(0.3)
P 		112.9
(-1.8)
P 		48.7
(-3)
P 		147.3
(-1.1)
P 		166.9
(-0.8)
P 		317
avr 338.7
(3) 		210.2
(-0) 		92.6
(-2.8) 		84.2
(-3) 		163.4
(-1.1) 		140.5
(-1.7) 		255
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175197_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22226
Sequence Type Exemplar sequence
Representative Public ID AV178862 NCBI
Target Description AV178862_rc /REP_DB=TREMBL Accession /GB=AV178862 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk573a3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F19C6.1 ENSEMBL cdna:known chromosome:CEL140:X:9991212:9999108:-1 gene:F19C6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9991260-9991537(-) 100.0 100.0
Public Domain and Genome References
Ensembl F19C6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88047 Hypothetical protein F19C6.1 [Caenorhabditis elegans] ref|NP_509676.1| G-protein-coupled Receptor Kinase family member (grk-1) [Caenorhabditis elegans] sp|Q09537|YQR1_CAEEL Probable G protein-coupled receptor kinase F19C6.1 0.0
blast CAE58755 Hypothetical protein CBG01947 [Caenorhabditis briggsae] 0.0
blast XP_689251 PREDICTED: similar to G protein-coupled receptor kinase 4 isoform alpha [Danio rerio] 1.0E-164
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 3.0E-14
hanks 1.4.5 AGC group; AGC IV GPCR kinases; IT11 8.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 7.0E-78
Pfam IPR000342 EMBL-EBI Regulator of G protein 3.7E-51
Sequence
Target Sequence 
>C. ELEGANS:175197_AT
aatttgttccatgtgctatcgtttttcttgctcttttttgaaacttttattgcccattct
ctcattttcttccaacccccgtttctgcagttttcttgtaaaaatgttgtcattttctgt
tttttttctattttccggtaagtgttcaacaacttatttgttttcaatatttctaatttt
taattcggtacagttcaaaactgagtctacacgttccttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTGTTCCATGTGCTATCGTTTT 221 175 32 Antisense
TTTGTTCCATGTGCTATCGTTTTTC 541 667 34 Antisense
TTCCATGTGCTATCGTTTTTCTTGC 370 701 38 Antisense
CCATGTGCTATCGTTTTTCTTGCTC 527 271 40 Antisense
ATGTGCTATCGTTTTTCTTGCTCTT 683 49 42 Antisense
TGAAACTTTTATTGCCCATTCTCTC 318 573 70 Antisense
GTTTCTGCAGTTTTCTTGTAAAAAT 509 449 112 Antisense
TCTATTTTCCGGTAAGTGTTCAACA 523 615 158 Antisense
GTGTTCAACAACTTATTTGTTTTCA 343 485 173 Antisense
TTTAATTCGGTACAGTTCAAAACTG 44 1 210 Antisense
CAAAACTGAGTCTACACGTTCCTTC 358 191 227 Antisense
Sequence Source Affymetrix Proprietary Database