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[175196_s_at]

Description AV178783_rc /REP_DB=TREMBL Accession /GB=AV178783 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk571h2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 66      4grp_highest_8_8 > 15      4grp_high_8_8 > 13      6grp_highest_nonorm > 90      6grp_total > 66      4grp_total > 10      6grp_highest_sub > Da      6grp_high1_sub > Da      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 415
1 2 3 4 range
A 156.8
(-2)
P 		152.4
(-2.1)
P 		96.6
(-3)
P 		454.1
(3)
P 		358
B 156.7
(-2.5)
P 		151.9
(-2.6)
P 		126.7
(-3)
P 		495.9
(3)
P 		369
C 127
(-3)
P 		232.3
(-1.4)
P 		192
(-2)
P 		511.9
(3)
P 		385
avr 146.8
(-2.9) 		178.9
(-2.3) 		138.4
(-3) 		487.3
(3) 		349

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 84.7
(-1.6)
P 		90
(-1.3)
P 		59.7
(-3)
P 		91.8
(-1.2)
P 		61.1
(-2.9)
P 		166.4
(3)
P 		107
B 64.8
(-2)
P 		53.5
(-3)
P 		99.2
(1)
P 		65.9
(-1.9)
P 		66.9
(-1.8)
P 		121.5
(3)
P 		68
C 95.7
(-1.3)
P 		67.6
(-2.7)
P 		61.7
(-3)
P 		145.3
(1.1)
P 		68.6
(-2.7)
P 		184.3
(3)
P 		123
avr 81.7
(-1.9) 		70.4
(-2.7) 		73.5
(-2.5) 		101
(-0.7) 		65.5
(-3) 		157.4
(3) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 57.1
(1.6)
P 		33.1
(-1.9)
P 		25.3
(-3)
P 		66.5
(3)
P 		41
B 50
(-1.4)
P 		37.5
(-2.4)
P 		29.4
(-3)
P 		105.7
(3)
P 		76
C 42
(-3)
P 		66.8
(0.4)
P 		66.9
(0.4)
P 		86.3
(3)
P 		44
avr 49.7
(-1.8) 		45.8
(-2.3) 		40.5
(-3) 		86.2
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 15.6
(-2.4)
P 		32
(1.1)
P 		13
(-3)
P 		23.3
(-0.8)
P 		18.4
(-1.8)
P 		40.5
(3)
P 		28
B 22.6
(-1.9)
P 		17.8
(-2.9)
P 		24.1
(-1.6)
P 		17.4
(-3)
P 		27.2
(-0.9)
P 		45.3
(3)
P 		28
C 35.5
(-0.4)
P 		20.6
(-2.4)
P 		15.7
(-3)
P 		29.2
(-1.2)
P 		22.2
(-2.2)
P 		61.7
(3)
P 		46
avr 24.6
(-1.7) 		23.5
(-1.9) 		17.6
(-3) 		23.3
(-1.9) 		22.6
(-2.1) 		49.2
(3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175196_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22070
Sequence Type Exemplar sequence
Representative Public ID AV178783 NCBI
Target Description AV178783_rc /REP_DB=TREMBL Accession /GB=AV178783 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk571h2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077362(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077362 NCBI Caenorhabditis elegans F59F5.2 (F59F5.2) mRNA, complete cds. 11/11 None
SNAP00000005591 ENSEMBL cdna:SNAP chromosome:CEL140:X:10533711:10537040:1 11/11 None
GENEFINDER00000005598 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10533711:10537088:1 11/11 None
F59F5.2 ENSEMBL cdna:known chromosome:CEL140:X:10533674:10534508:1 gene:F59F5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10534108-10534432(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59F5.2
Entrez Gene 186637 Entrez gene
SwissProt Q21045 EMBL-EBI
WormBase CE26715 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T23014 hypothetical protein F59F5.2 - Caenorhabditis elegans 0.0
blast CAC35819 Hypothetical protein F59F5.8 [Caenorhabditis elegans] ref|NP_509764.1| F59F5.8 [Caenorhabditis elegans] 0.0
blast CAE60797 Hypothetical protein CBG04489 [Caenorhabditis briggsae] 1.0E-174
blast CAE60797 Hypothetical protein CBG04489 [Caenorhabditis briggsae] 1.0E-173
blast CAA90656 Hypothetical protein F59F5.2 [Caenorhabditis elegans] ref|NP_509763.1| F59F5.2 [Caenorhabditis elegans] gb|AAG50212.1| XL153 [Caenorhabditis elegans] sp|Q21045|YB70_CAEEL Hypothetical protein F59F5.2 in chromosome X 4.0E-97
blast T23014 hypothetical protein F59F5.2 - Caenorhabditis elegans 4.0E-96
Sequence
Target Sequence 
>C. ELEGANS:175196_S_AT
aattatctagtgttggtgtttgccaatgacgatcgcaagcgaatcgaagtctctcaaaca
atcgaacatacaatagcgacgttatttggtccattaattgctttttgtcacactgatctc
acgaccgtaaagaaaccgaaagagcatcttgcctgtgcattgacgcgaaaattgtcatac
agcccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTATCTAGTGTTGGTGTTTGCCA 44 173 53 Antisense
GTGTTTGCCAATGACGATCGCAAGC 613 485 68 Antisense
GATCGCAAGCGAATCGAAGTCTCTC 556 415 83 Antisense
GAAGTCTCTCAAACAATCGAACATA 185 337 98 Antisense
CAATAGCGACGTTATTTGGTCCATT 509 177 123 Antisense
GTTATTTGGTCCATTAATTGCTTTT 12 447 133 Antisense
AATTGCTTTTTGTCACACTGATCTC 287 179 148 Antisense
TCACACTGATCTCACGACCGTAAAG 451 627 160 Antisense
AACCGAAAGAGCATCTTGCCTGTGC 291 147 186 Antisense
CTTGCCTGTGCATTGACGCGAAAAT 361 209 200 Antisense
ACGCGAAAATTGTCATACAGCCCAA 275 91 215 Antisense
Sequence Source Affymetrix Proprietary Database