[Home] | [Total List]

[175195_at]

Description AU115337_rc /REP_DB=TREMBL Accession /GB=AU115337 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk730h1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 20      6grp_highest_nonorm > 41      6grp_total > 30      4grp_total > 13      6grp_highest_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 771
1 2 3 4 range
A 373.4
(-0.1)
P 		82.5
(-2.9)
A 		67.4
(-3)
A 		701.5
(3)
P 		634
B 368.8
(-0.6)
P 		88.5
(-3)
A 		90.3
(-3)
M 		779.3
(3)
P 		691
C 509.3
(0.3)
P 		95.5
(-3)
A 		112.5
(-2.9)
P 		837.9
(3)
P 		742
avr 417.2
(-0.1) 		88.8
(-3) 		90.1
(-3) 		772.9
(3) 		684

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 539
1 2 3 4 5 6 range
A 652.3
(-0.4)
P 		842.9
(1.8)
P 		932.1
(2.9)
P 		942.4
(3)
P 		440.4
(-2.9)
P 		432.4
(-3)
P 		510
B 757.1
(0.2)
P 		902.6
(3)
P 		815
(1.3)
P 		587.9
(-3)
P 		616.8
(-2.4)
P 		642.4
(-2)
P 		315
C 705
(0.4)
P 		931.3
(3)
P 		713.1
(0.5)
P 		902.7
(2.7)
P 		403.4
(-3)
P 		814.3
(1.7)
P 		528
avr 704.8
(0.2) 		892.3
(3) 		820.1
(1.9) 		811
(1.8) 		486.9
(-3) 		629.7
(-0.9) 		405
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 136
(3)
P 		17.9
(-3)
A 		17.6
(-3)
A 		102.7
(1.3)
P 		118
B 117.6
(1)
P 		21.9
(-3)
A 		20.9
(-3)
M 		166.1
(3)
P 		145
C 168.6
(3)
P 		27.5
(-3)
A 		39.2
(-2.5)
P 		141.3
(1.8)
P 		141
avr 140.7
(3) 		22.4
(-3) 		25.9
(-2.8) 		136.7
(2.8) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 195
1 2 3 4 5 6 range
A 120.3
(-2.5)
P 		299.8
(3)
P 		203
(0)
P 		239
(1.1)
P 		132.9
(-2.1)
P 		105.3
(-3)
P 		195
B 263.4
(1.5)
P 		300.4
(3)
P 		197.9
(-1.3)
P 		155.7
(-3)
P 		250.6
(0.9)
P 		239.5
(0.5)
P 		145
C 261.3
(2.1)
P 		284.2
(3)
P 		181.5
(-1)
P 		181.5
(-1)
P 		130.5
(-3)
P 		272.6
(2.5)
P 		154
avr 215
(-0.9) 		294.8
(3) 		194.1
(-1.9) 		192.1
(-2) 		171.3
(-3) 		205.8
(-1.3) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175195_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21894
Sequence Type Exemplar sequence
Representative Public ID AU115337 NCBI
Target Description AU115337_rc /REP_DB=TREMBL Accession /GB=AU115337 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk730h1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T09F5.12 ENSEMBL cdna:pseudogene chromosome:CEL140:V:15167374:15168906:-1 gene:T09F5.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036440 5/11 Cross Hyb Matching Probes None
GENEFINDER00000036450 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15167409-15167694(-) 100.0 100.0
Public Domain and Genome References
Ensembl T09F5.12
Sequence
Target Sequence 
>C. ELEGANS:175195_AT
ggttggcatttcgtattggacagaacacatttgaagtaaaatatggtgaaacatcggtaa
cgtattatcaggaacgacaagttcatgaatgctggtctttgggaagatgttatttagaaa
aacatgtttgatgaagtgccaatcgttacacaacacgatctacaaagtattcagcacgaa
aaatcaatgatgttcaaaatcaaaattggagctggattgccaccagatgacgggattgtt
ccgattctcccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTGGCATTTCGTATTGGACAGAA 658 507 13 Antisense
GTATTGGACAGAACACATTTGAAGT 51 453 25 Antisense
GAAACATCGGTAACGTATTATCAGG 235 357 60 Antisense
GACAAGTTCATGAATGCTGGTCTTT 6 365 88 Antisense
GAATGCTGGTCTTTGGGAAGATGTT 436 331 99 Antisense
ACATGTTTGATGAAGTGCCAATCGT 391 107 134 Antisense
GAAGTGCCAATCGTTACACAACACG 632 335 145 Antisense
CACGATCTACAAAGTATTCAGCACG 644 197 166 Antisense
CAAAATTGGAGCTGGATTGCCACCA 300 183 213 Antisense
GGATTGCCACCAGATGACGGGATTG 687 507 226 Antisense
GACGGGATTGTTCCGATTCTCCCGA 269 377 241 Antisense
Sequence Source Affymetrix Proprietary Database