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[175194_at]

Description AV181648_rc /REP_DB=TREMBL Accession /GB=AV181648 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk623a8 : 3prime end, single read.
Cluster 6grp_total > 26      4grp_total > 46      6grp_cgc > 24      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 647
1 2 3 4 range
A 751.9
(3)
P 		360.6
(-0.9)
A 		183.5
(-2.7)
A 		153
(-3)
A 		599
B 695.3
(3)
P 		328.9
(-1.2)
A 		235.3
(-2.2)
A 		165.7
(-3)
A 		530
C 799.5
(3)
P 		348.7
(-1.4)
A 		273
(-2.1)
A 		183.1
(-3)
A 		616
avr 748.9
(3) 		346.1
(-1.2) 		230.6
(-2.3) 		167.3
(-3) 		582

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 568
1 2 3 4 5 6 range
A 391.2
(2.9)
P 		395.5
(3)
M 		299.7
(0.8)
A 		129.1
(-3)
A 		176.9
(-1.9)
A 		141.9
(-2.7)
A 		266
B 686.8
(3)
P 		424.7
(-0)
P 		366.1
(-0.7)
A 		168
(-3)
A 		171.3
(-3)
A 		279.6
(-1.7)
P 		519
C 497.9
(3)
P 		483.6
(2.8)
M 		200.5
(-1.7)
A 		156.4
(-2.4)
A 		119.3
(-3)
A 		318
(0.1)
P 		379
avr 525.3
(3) 		434.6
(1.5) 		288.8
(-0.8) 		151.2
(-3) 		155.8
(-2.9) 		246.5
(-1.5) 		374
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 251
1 2 3 4 range
A 273.8
(3)
P 		78.3
(-1.7)
A 		48
(-2.4)
A 		22.4
(-3)
A 		251
B 221.7
(3)
P 		81.2
(-1.5)
A 		54.5
(-2.4)
A 		35.3
(-3)
A 		186
C 264.7
(3)
P 		100.2
(-1.2)
A 		95.1
(-1.4)
A 		30.9
(-3)
A 		234
avr 253.4
(3) 		86.6
(-1.5) 		65.9
(-2) 		29.5
(-3) 		224

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 208
1 2 3 4 5 6 range
A 72.1
(-0.8)
P 		140.7
(3)
M 		65.3
(-1.2)
A 		32.7
(-3)
A 		53.4
(-1.9)
A 		34.5
(-2.9)
A 		108
B 239
(3)
P 		141.4
(-0)
P 		88.9
(-1.6)
A 		44.5
(-3)
A 		69.6
(-2.2)
A 		104.3
(-1.2)
P 		195
C 184.5
(3)
P 		147.6
(1.6)
M 		51
(-2.2)
A 		31.4
(-3)
A 		38.6
(-2.7)
A 		106.4
(-0.1)
P 		153
avr 165.2
(3) 		143.2
(2) 		68.4
(-1.5) 		36.2
(-3) 		53.9
(-2.2) 		81.7
(-0.9) 		129
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175194_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21635
Sequence Type Exemplar sequence
Representative Public ID AV181648 NCBI
Target Description AV181648_rc /REP_DB=TREMBL Accession /GB=AV181648 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk623a8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068009(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068009 NCBI Caenorhabditis elegans Y37E11AR.5 (Y37E11AR.5) mRNA, complete cds. 11/11 None
SNAP00000021668 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3748286:3751093:-1 11/11 None
Y37E11AR.5 ENSEMBL cdna:known chromosome:CEL140:IV:3748252:3751096:-1 gene:Y37E11AR.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3748280-3748567(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ugt-45
Ensembl Y37E11AR.5
Entrez Gene 177139 Entrez gene
SwissProt Q965X5 EMBL-EBI
WormBase CE33854 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.28624.1.S1_S_AT similar to UDP glycosyltransferase 3 family, polypeptide A2 cfa
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAP13761 Hypothetical protein Y37E11AR.5 [Caenorhabditis elegans] ref|NP_500410.2| Y37E11AR.5 [Caenorhabditis elegans] 0.0
blast CAE65678 Hypothetical protein CBG10745 [Caenorhabditis briggsae] 0.0
blast CAE74033 Hypothetical protein CBG21683 [Caenorhabditis briggsae] 3.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.3E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500410.2 2 3-25,491-513
Y37E11AR.5 2 3-25,491-513
SNAP00000021668 2 3-25,491-513
Sequence
Target Sequence 
>C. ELEGANS:175194_AT
cgggcaaatgcccaggtggacgtctgctggaaaagaattctcgtttttgaaatatttcaa
tttggatctagtgatcattgcagtttttatattttttctgtcaattgtctcgacggtact
gttgattagacacctgctcgcgaaacttggtttctctgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGGCAAATGCCCAGGTGGACGTCT 147 245 108 Antisense
CAAATGCCCAGGTGGACGTCTGCTG 626 191 112 Antisense
GGACGTCTGCTGGAAAAGAATTCTC 357 523 125 Antisense
GAATTCTCGTTTTTGAAATATTTCA 170 325 142 Antisense
GATCTAGTGATCATTGCAGTTTTTA 334 419 172 Antisense
ATATTTTTTCTGTCAATTGTCTCGA 559 19 196 Antisense
AATTGTCTCGACGGTACTGTTGATT 272 179 210 Antisense
TACTGTTGATTAGACACCTGCTCGC 315 647 224 Antisense
TGATTAGACACCTGCTCGCGAAACT 531 563 230 Antisense
ACACCTGCTCGCGAAACTTGGTTTC 414 109 237 Antisense
GCTCGCGAAACTTGGTTTCTCTGGA 148 299 243 Antisense
Sequence Source Affymetrix Proprietary Database