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[175193_at]

Description AU113611_rc /REP_DB=TREMBL Accession /GB=AU113611 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk709f4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 91      4grp_highest_8_8 > 10      4grp_high_8_8 > 62      6grp_highest_nonorm > 63      6grp_total > 93      4grp_total > 57      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 503
1 2 3 4 range
A 492.4
(-1.1)
P 		648.6
(1.2)
P 		773.6
(3)
P 		366.5
(-3)
P 		407
B 374.9
(-1.7)
P 		586.2
(1.9)
P 		651.9
(3)
P 		297.8
(-3)
P 		354
C 406.8
(-1.3)
P 		661.7
(2)
P 		739.2
(3)
P 		270.4
(-3)
P 		469
avr 424.7
(-1.3) 		632.2
(1.7) 		721.6
(3) 		311.6
(-3) 		410

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 842
1 2 3 4 5 6 range
A 445.5
(-2.4)
P 		744.5
(-0.2)
P 		355.9
(-3)
P 		572.5
(-1.5)
P 		1197.5
(3)
P 		545.2
(-1.7)
P 		842
B 566.1
(-1.3)
P 		626.9
(-0.7)
P 		385.6
(-3)
P 		622.6
(-0.7)
P 		1009.2
(3)
P 		587.2
(-1.1)
P 		624
C 567.1
(-2.3)
P 		685.6
(-1)
P 		503.4
(-3)
P 		587.3
(-2.1)
P 		1046
(3)
P 		525.6
(-2.8)
P 		543
avr 526.2
(-2) 		685.7
(-0.6) 		415
(-3) 		594.1
(-1.4) 		1084.2
(3) 		552.7
(-1.8) 		669
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 212
1 2 3 4 range
A 179.3
(2.1)
P 		140.8
(0.5)
P 		202.2
(3)
P 		53.6
(-3)
P 		149
B 119.5
(0.8)
P 		144.8
(2.6)
P 		151.1
(3)
P 		63.5
(-3)
P 		88
C 134.7
(-0.5)
P 		190.2
(1.1)
P 		257.6
(3)
P 		45.6
(-3)
P 		212
avr 144.5
(0.6) 		158.6
(1.2) 		203.6
(3) 		54.2
(-3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 333
1 2 3 4 5 6 range
A 82.1
(-2.9)
P 		264.8
(1)
P 		77.5
(-3)
P 		145.2
(-1.6)
P 		361.3
(3)
P 		132.7
(-1.8)
P 		284
B 197
(-1)
P 		208.7
(-0.8)
P 		93.6
(-3)
P 		164.9
(-1.6)
P 		410
(3)
P 		219
(-0.6)
P 		316
C 210.2
(-0.5)
P 		209.2
(-0.5)
P 		128.1
(-2.7)
P 		118.1
(-3)
P 		338.5
(3)
P 		175.9
(-1.4)
P 		220
avr 163.1
(-1.6) 		227.6
(-0.2) 		99.7
(-3) 		142.7
(-2) 		369.9
(3) 		175.9
(-1.3) 		270
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175193_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21779
Sequence Type Exemplar sequence
Representative Public ID AU113611 NCBI
Target Description AU113611_rc /REP_DB=TREMBL Accession /GB=AU113611 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk709f4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072307(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072307 NCBI Caenorhabditis elegans T25F10.3 (T25F10.3) mRNA, complete cds. 11/11 None
T25F10.3 ENSEMBL cdna:known chromosome:CEL140:V:6747675:6751203:1 gene:T25F10.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6750840-6751120(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T25F10.3
Entrez Gene 179067 Entrez gene
SwissProt Q23046 EMBL-EBI
WormBase CE27449 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04985 Hypothetical protein T25F10.3 [Caenorhabditis elegans] ref|NP_504708.1| T25F10.3 [Caenorhabditis elegans] 0.0
blast CAE71943 Hypothetical protein CBG19009 [Caenorhabditis briggsae] 0.0
blast AAF59114 CG33087-PC [Drosophila melanogaster] ref|NP_788284.1| CG33087-PC [Drosophila melanogaster] 6.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504708.1 1 264-283
T25F10.3 1 264-283
Sequence
Target Sequence 
>C. ELEGANS:175193_AT
attgtaagttgttctttcttctcctctcccggcagtctatctgtcctcaggacctgtacc
tcaagcggtacaacatcaaaaatttgctcagtatttcttttaataataccactgctctca
cagtcatctcggttactttcaagtgtcccaagactcttttctcaaatgtttccattcttg
gctcatcatttcaatttcgggtaattcatattctttctgtcactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGTAAGTTGTTCTTTCTTCTCCT 615 3 38 Antisense
CAGTCTATCTGTCCTCAGGACCTGT 578 205 70 Antisense
TGTCCTCAGGACCTGTACCTCAAGC 524 555 79 Antisense
ACCTCAAGCGGTACAACATCAAAAA 545 83 95 Antisense
TAATACCACTGCTCTCACAGTCATC 635 633 141 Antisense
CTCACAGTCATCTCGGTTACTTTCA 390 227 154 Antisense
GTTACTTTCAAGTGTCCCAAGACTC 97 447 169 Antisense
TCCCAAGACTCTTTTCTCAAATGTT 214 599 183 Antisense
AAATGTTTCCATTCTTGGCTCATCA 227 121 201 Antisense
TGGCTCATCATTTCAATTTCGGGTA 568 545 216 Antisense
GTAATTCATATTCTTTCTGTCACTT 502 463 238 Antisense
Sequence Source Affymetrix Proprietary Database