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[175192_at]

Description AU114622_rc /REP_DB=TREMBL Accession /GB=AU114622 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk721d6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 26      4grp_high_8_8 > 10      6grp_highest_nonorm > 80      6grp_total > 25      4grp_total > 22      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 317.9
(3)
P 		220.7
(-0.9)
A 		166.5
(-3)
P 		308.3
(2.6)
P 		151
B 306.5
(1.1)
P 		189.2
(-2.4)
P 		170.9
(-3)
M 		367.1
(3)
P 		196
C 362.6
(3)
P 		178.1
(-2.6)
A 		163.4
(-3)
P 		342.2
(2.4)
P 		199
avr 329
(2.6) 		196
(-2) 		166.9
(-3) 		339.2
(3) 		172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 216.6
(1.8)
P 		232.8
(3)
P 		195.1
(0.2)
P 		159
(-2.5)
P 		152.4
(-3)
P 		154
(-2.9)
P 		80
B 219.5
(3)
P 		212.5
(2.6)
P 		198.2
(1.8)
P 		110.6
(-3)
P 		128.7
(-2)
P 		146.6
(-1)
P 		109
C 297.3
(3)
P 		236.5
(0.9)
P 		165.7
(-1.6)
P 		124.6
(-3)
P 		164.4
(-1.6)
P 		158
(-1.8)
P 		173
avr 244.5
(3) 		227.3
(2.1) 		186.3
(-0.1) 		131.4
(-3) 		148.5
(-2.1) 		152.9
(-1.9) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 115.8
(3)
P 		47.9
(-2.6)
A 		43.5
(-3)
P 		45.1
(-2.9)
P 		72
B 97.7
(3)
P 		46.7
(-2.3)
P 		39.6
(-3)
M 		78.2
(1)
P 		58
C 120
(3)
P 		51.2
(-3)
A 		57
(-2.5)
P 		57.7
(-2.4)
P 		69
avr 111.2
(3) 		48.6
(-2.8) 		46.7
(-3) 		60.3
(-1.7) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 39.9
(-2.7)
P 		82.8
(3)
P 		42.5
(-2.3)
P 		40.3
(-2.6)
P 		46
(-1.9)
P 		37.5
(-3)
P 		45
B 76.4
(3)
P 		70.7
(2.3)
P 		48.1
(-0.6)
P 		29.3
(-3)
P 		52.3
(-0.1)
P 		54.7
(0.2)
P 		47
C 110.2
(3)
P 		72.2
(0.3)
P 		42.2
(-1.8)
P 		25.1
(-3)
P 		53.2
(-1)
P 		52.9
(-1)
P 		85
avr 75.5
(3) 		75.2
(3) 		44.3
(-1.3) 		31.6
(-3) 		50.5
(-0.4) 		48.4
(-0.7) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175192_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21677
Sequence Type Exemplar sequence
Representative Public ID AU114622 NCBI
Target Description AU114622_rc /REP_DB=TREMBL Accession /GB=AU114622 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk721d6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072030(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072030 NCBI Caenorhabditis elegans C35A11.1 (C35A11.1) mRNA, complete cds. 11/11 A 
SNAP00000008759 ENSEMBL cdna:SNAP chromosome:CEL140:V:5407566:5408010:1 11/11 None
GENEFINDER00000008761 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5407648:5408010:1 11/11 None
C35A11.1 ENSEMBL cdna:known chromosome:CEL140:V:5405170:5408155:1 gene:C35A11.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5407685-5408079(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C35A11.1
Entrez Gene 178922 Entrez gene
SwissProt O16548 EMBL-EBI
WormBase CE37616 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1628166_A_AT Dromyosuppressin receptor 2 dm
DROSOPHILA_2:1624049_AT Dromyosuppressin receptor 2 dm
DROSGENOME1:148037_AT Dromyosuppressin receptor 2 dm
DROSGENOME1:148036_AT Dromyosuppressin receptor 2 dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66039 Hypothetical protein C35A11.1 [Caenorhabditis elegans] ref|NP_504431.2| C35A11.1 [Caenorhabditis elegans] 0.0
blast CAE64634 Hypothetical protein CBG09395 [Caenorhabditis briggsae] 0.0
blast NP_493716 D1069.4 [Caenorhabditis elegans] gb|AAB94944.1| Hypothetical protein D1069.4 [Caenorhabditis elegans] 7.0E-55
blast AAB66039 Hypothetical protein C35A11.1 [Caenorhabditis elegans] ref|NP_504431.2| C35A11.1 [Caenorhabditis elegans] 2.0E-39
blast AAB66039 Hypothetical protein C35A11.1 [Caenorhabditis elegans] ref|NP_504431.2| C35A11.1 [Caenorhabditis elegans] 5.0E-34
blast CAE64634 Hypothetical protein CBG09395 [Caenorhabditis briggsae] 3.0E-26
blast CAE64634 Hypothetical protein CBG09395 [Caenorhabditis briggsae] 1.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504431.2 7 35-57,70-92,112-134,155-177,227-249,288-310,325-347
C35A11.1 7 35-57,70-92,112-134,155-177,227-249,288-310,325-347
SNAP00000008759 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:175192_AT
cattccttcgtgggcttgtggattgtggacgacccgtcgtggttctccgacggaactttc
acagcttcagttgaacaacagcttacgactaggaagaaaacaaagctatacgccactggc
aactgaaccggaaccagcacgcaatgagtattggcggtatgaagcttccgtgtcggacaa
tcagaacagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTCCTTCGTGGGCTTGTGGATTG 96 217 13 Antisense
GCTTGTGGATTGTGGACGACCCGTC 209 307 26 Antisense
ATTGTGGACGACCCGTCGTGGTTCT 701 1 34 Antisense
TCGTGGTTCTCCGACGGAACTTTCA 3 607 49 Antisense
CCGACGGAACTTTCACAGCTTCAGT 106 249 59 Antisense
GAACTTTCACAGCTTCAGTTGAACA 177 349 65 Antisense
GTTGAACAACAGCTTACGACTAGGA 68 433 82 Antisense
AACAAAGCTATACGCCACTGGCAAC 595 133 111 Antisense
GCCACTGGCAACTGAACCGGAACCA 538 279 124 Antisense
ACCGGAACCAGCACGCAATGAGTAT 249 89 139 Antisense
TCCGTGTCGGACAATCAGAACAGCA 297 593 179 Antisense
Sequence Source Affymetrix Proprietary Database