[Home] | [Total List]

[175191_at]

Description AV200380_rc /REP_DB=TREMBL Accession /GB=AV200380 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk574d5 : 3prime end, single read.
Cluster 6grp_total > 0      4grp_total > 20      6grp_total_sub > Hat      6grp_cgc > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 122.9
(-0.5)
A 		134.5
(0.3)
A 		89.4
(-3)
A 		170.5
(3)
M 		81
B 140.8
(0.7)
A 		94.6
(-2)
A 		77.8
(-3)
A 		179
(3)
P 		101
C 80.8
(-3)
M 		115
(-0.6)
A 		97.4
(-1.8)
A 		164.7
(3)
P 		84
avr 114.8
(-1.1) 		114.7
(-1.1) 		88.2
(-3) 		171.4
(3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 109.9
(-0.5)
A 		86.9
(-3)
A 		110.6
(-0.5)
A 		107
(-0.9)
A 		143.2
(3)
A 		128.3
(1.4)
M 		56
B 109.8
(1.2)
A 		133.5
(3)
A 		54.8
(-3)
A 		59.5
(-2.6)
A 		83
(-0.9)
A 		114.6
(1.6)
P 		79
C 74.9
(-3)
A 		150.6
(3)
A 		94.4
(-1.4)
A 		142.3
(2.3)
M 		74.5
(-3)
A 		110.6
(-0.2)
P 		76
avr 98.2
(-1.1) 		123.7
(3) 		86.6
(-3) 		102.9
(-0.4) 		100.2
(-0.8) 		117.8
(2) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 44.8
(3)
A 		29.2
(-1.4)
A 		23.4
(-3)
A 		25
(-2.6)
M 		21
B 44.9
(3)
A 		23.4
(-1.8)
A 		18
(-3)
A 		38.1
(1.5)
P 		27
C 26.8
(-3)
M 		33
(2.2)
A 		33.9
(3)
A 		27.8
(-2.2)
P 		7
avr 38.8
(3) 		28.5
(-1.5) 		25.1
(-3) 		30.3
(-0.7) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 20.3
(-3)
A 		30.9
(-0.2)
A 		24.1
(-2)
A 		27.1
(-1.2)
A 		43.2
(3)
A 		31.2
(-0.1)
M 		23
B 38.2
(1.8)
A 		44.4
(3)
A 		13.3
(-3)
A 		15.8
(-2.5)
A 		33.7
(0.9)
A 		42.7
(2.7)
P 		31
C 27.8
(-2)
A 		46
(3)
A 		24
(-3)
A 		28.6
(-1.7)
M 		24.1
(-3)
A 		37
(0.5)
P 		22
avr 28.8
(-0.5) 		40.4
(3) 		20.5
(-3) 		23.8
(-2) 		33.7
(1) 		37
(2) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175191_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21347
Sequence Type Exemplar sequence
Representative Public ID AV200380 NCBI
Target Description AV200380_rc /REP_DB=TREMBL Accession /GB=AV200380 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk574d5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV200380
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV200380 AV200380_rc /REP_DB=TREMBL Accession /GB=AV200380 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk574d5 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NR_002385 11/11 Negative Strand Matching Probes None
NM_070141 9/11 Negative Strand Matching Probes A 
SNAP00000008999 9/11 Negative Strand Matching Probes None
GENEFINDER00000009017 9/11 Negative Strand Matching Probes None
JC8.3a.2 9/11 Negative Strand Matching Probes A 
JC8.3a.1 9/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13240082-13240361(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175191_AT
ctcccgacccaacgcattaaatgcgtaccgttcttgaccttcttgcggtcacgtggtggc
tccttgagctccttgacgatgagggaagcagcagatgggacaacgtcgatcttggcaaca
cggttctggatggtcaatttgcaggtgaccttaagacccttccagtcttgggtggccttg
gcgatgtcttctccgatcttctttggagacaatccaagtggtccgacctttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCCGACCCAACGCATTAAATGCG 231 233 21 Antisense
TTAAATGCGTACCGTTCTTGACCTT 544 653 37 Antisense
TTCTTGACCTTCTTGCGGTCACGTG 75 689 51 Antisense
CTCCTTGAGCTCCTTGACGATGAGG 452 235 80 Antisense
GGGAAGCAGCAGATGGGACAACGTC 185 493 103 Antisense
GGACAACGTCGATCTTGGCAACACG 45 525 118 Antisense
TGGCAACACGGTTCTGGATGGTCAA 337 545 133 Antisense
TGCAGGTGACCTTAAGACCCTTCCA 655 573 160 Antisense
TAAGACCCTTCCAGTCTTGGGTGGC 102 545 172 Antisense
ATGTCTTCTCCGATCTTCTTTGGAG 703 47 204 Antisense
GACAATCCAAGTGGTCCGACCTTTG 55 361 228 Antisense
Sequence Source Affymetrix Proprietary Database