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[175190_at]

Description AV198857_rc /REP_DB=TREMBL Accession /GB=AV198857 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk382e1 : 3prime end, single read.
Cluster 6grp_total > 68      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 360
1 2 3 4 range
A 8.6
(-2.9)
A 		5.2
(-3)
A 		5.9
(-3)
A 		316.9
(3)
P 		312
B 20.3
(-2.9)
A 		63.9
(-2.1)
A 		13.8
(-3)
A 		364.5
(3)
P 		351
C 4.2
(-3)
A 		16.1
(-2.8)
A 		7.1
(-2.9)
A 		325.1
(3)
P 		321
avr 11
(-3) 		28.4
(-2.6) 		8.9
(-3) 		335.5
(3) 		327

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 427
1 2 3 4 5 6 range
A 12.6
(-2.9)
A 		4.8
(-3)
A 		7.3
(-3)
A 		4.6
(-3)
A 		58.6
(-2.2)
M 		430.5
(3)
P 		426
B 9
(-2.9)
A 		3.8
(-3)
A 		5.7
(-3)
A 		3.7
(-3)
A 		46
(-2.3)
A 		342.5
(3)
P 		339
C 21.8
(-2.7)
A 		6.2
(-3)
A 		6
(-3)
A 		4.2
(-3)
A 		81.1
(-1.9)
P 		419.4
(3)
P 		415
avr 14.5
(-2.8) 		4.9
(-3) 		6.3
(-3) 		4.2
(-3) 		61.9
(-2.1) 		397.5
(3) 		393
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 3.1
(-2.7)
A 		1.1
(-3)
A 		1.5
(-2.9)
A 		46.4
(3)
P 		45
B 6.5
(-2.7)
A 		15.8
(-2)
A 		3.2
(-3)
A 		77.7
(3)
P 		75
C 1.4
(-3)
A 		4.6
(-2.6)
A 		2.5
(-2.9)
A 		54.8
(3)
P 		53
avr 3.7
(-2.9) 		7.2
(-2.5) 		2.4
(-3) 		59.6
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 2.3
(-2.9)
A 		1.7
(-3)
A 		1.6
(-3)
A 		1.2
(-3)
A 		17.7
(-2)
M 		104.8
(3)
P 		104
B 3.1
(-2.9)
A 		1.3
(-3)
A 		1.4
(-3)
A 		1
(-3)
A 		18.7
(-2.2)
A 		127.7
(3)
P 		127
C 8.1
(-2.7)
A 		1.9
(-3)
A 		1.5
(-3)
A 		0.9
(-3)
A 		26.2
(-1.9)
P 		140.4
(3)
P 		140
avr 4.5
(-2.8) 		1.6
(-3) 		1.5
(-3) 		1
(-3) 		20.9
(-2) 		124.3
(3) 		123
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175190_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22001
Sequence Type Exemplar sequence
Representative Public ID AV198857 NCBI
Target Description AV198857_rc /REP_DB=TREMBL Accession /GB=AV198857 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk382e1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070929(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070929 NCBI Caenorhabditis elegans R13D11.10 (R13D11.10) mRNA, complete cds. 11/11 None
SNAP00000031832 ENSEMBL cdna:SNAP chromosome:CEL140:V:812738:813024:-1 11/11 None
GENEFINDER00000031840 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:812738:813024:-1 11/11 None
R13D11.10 ENSEMBL cdna:known chromosome:CEL140:V:812709:813024:-1 gene:R13D11.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:812718-812985(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R13D11.10
Entrez Gene 178588 Entrez gene
SwissProt Q965M0 EMBL-EBI
WormBase CE28768 Wormbase
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503330.1 1 6-23
R13D11.10 1 6-23
SNAP00000031832 1 6-23
GENEFINDER00000031840 1 6-23
Sequence
Target Sequence 
>C. ELEGANS:175190_AT
atcgtttgctgtgcaatgctcggagcagctgaacacgaagaagtcagaatccgccacaaa
cgacaatggggaggatggggaggacgtggaggctatggaggctatggataccgcccgtat
ggtggatatggtggatggggcggccgaggaatgggaggatggggaggacgtggcatgggt
ggatgggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGTTTGCTGTGCAATGCTCGGAG 12 37 13 Antisense
AATGCTCGGAGCAGCTGAACACGAA 395 165 27 Antisense
CACGAAGAAGTCAGAATCCGCCACA 144 195 46 Antisense
AATCCGCCACAAACGACAATGGGGA 203 167 60 Antisense
GGAGGACGTGGAGGCTATGGAGGCT 329 515 91 Antisense
ATGGAGGCTATGGATACCGCCCGTA 669 51 107 Antisense
TATGGATACCGCCCGTATGGTGGAT 448 617 115 Antisense
GTGGATGGGGCGGCCGAGGAATGGG 602 489 143 Antisense
GGCGGCCGAGGAATGGGAGGATGGG 81 541 151 Antisense
ATGGGGAGGACGTGGCATGGGTGGA 109 49 171 Antisense
GAGGACGTGGCATGGGTGGATGGGG 66 403 176 Antisense
Sequence Source Affymetrix Proprietary Database