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[175189_at]

Description AV176423_rc /REP_DB=TREMBL Accession /GB=AV176423 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk513b3 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 68      4grp_highest_8_8 > 47      4grp_high_8_8 > 20      6grp_total > 79      4grp_total > 20      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 107.8
(-1.4)
P 		111.8
(-1.1)
P 		87
(-3)
P 		165.5
(3)
P 		79
B 145.3
(3)
P 		70.3
(-2.4)
P 		62.7
(-3)
P 		122.5
(1.3)
P 		83
C 79.7
(-2.1)
P 		125.8
(0.7)
P 		65.8
(-3)
P 		163.3
(3)
P 		98
avr 110.9
(-0) 		102.6
(-0.6) 		71.8
(-3) 		150.4
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 146.2
(-0.3)
P 		150.5
(-0.1)
P 		193.4
(1.9)
P 		89.1
(-3)
P 		215.5
(2.9)
P 		216.7
(3)
P 		128
B 160.4
(-0.1)
P 		155.7
(-0.2)
P 		121.6
(-1.6)
P 		85
(-3)
P 		130.5
(-1.2)
P 		238.7
(3)
P 		154
C 155.8
(-0.1)
P 		245.9
(2.5)
P 		56.3
(-3)
M 		107.2
(-1.5)
P 		146.8
(-0.4)
P 		264.9
(3)
P 		209
avr 154.1
(-0.5) 		184
(0.7) 		123.8
(-1.8) 		93.8
(-3) 		164.3
(-0.1) 		240.1
(3) 		146
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 39.2
(3)
P 		24.3
(-2.4)
P 		22.7
(-3)
P 		24.2
(-2.5)
P 		17
B 46.3
(3)
P 		17.4
(-2.5)
P 		14.5
(-3)
P 		26.1
(-0.8)
P 		32
C 26.4
(-1.4)
P 		36.2
(3)
P 		22.9
(-3)
P 		27.5
(-0.9)
P 		13
avr 37.3
(3) 		26
(-0.9) 		20
(-3) 		25.9
(-1) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 27
(-2.4)
P 		53.5
(1.4)
P 		42.1
(-0.2)
P 		22.6
(-3)
P 		65
(3)
P 		52.8
(1.3)
P 		42
B 55.8
(0)
P 		51.8
(-0.4)
P 		29.5
(-2.4)
P 		22.5
(-3)
P 		53
(-0.2)
P 		89
(3)
P 		67
C 57.8
(0.5)
P 		75
(1.9)
P 		14.3
(-3)
M 		21.6
(-2.4)
P 		47.5
(-0.3)
P 		88.7
(3)
P 		74
avr 46.9
(-0.3) 		60.1
(1.2) 		28.6
(-2.3) 		22.2
(-3) 		55.2
(0.6) 		76.8
(3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175189_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22223
Sequence Type Exemplar sequence
Representative Public ID AV176423 NCBI
Target Description AV176423_rc /REP_DB=TREMBL Accession /GB=AV176423 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk513b3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C43C3.3 ENSEMBL cdna:known chromosome:CEL140:X:9698609:9701609:1 gene:C43C3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9701184-9701537(+) 100.0 100.0
Public Domain and Genome References
Ensembl C43C3.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87330 Hypothetical protein C43C3.3 [Caenorhabditis elegans] ref|NP_509630.1| abnormal DYe Filling family member (dyf-8) [Caenorhabditis elegans] sp|Q09276|DYF8_CAEEL Protein dyf-8 (Abnormal dye filling protein 8) 0.0
blast B89614 protein C43C3.3 [imported] - Caenorhabditis elegans 0.0
blast CAE69770 Hypothetical protein CBG16051 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 3.3E-37
Trans Membrane
ID Number Of Domains Domain Boundaries
C43C3.3 1 379-401
Sequence
Target Sequence 
>C. ELEGANS:175189_AT
gttacttctatttacacctagtgtattttcgtttttatcatatatttgaactctaatttt
tttaaacttttatttgtttcctccaattcccatctgtcatgattttcagaatcagattag
tttgatttaacgagactgatttgttgcatggtcgccgttatttccttataatgagtcaac
cccctatcgtcgtaacttttcgttctcattatttcctcaggcatgttatctcatttttga
tttctctttagacataagcaattacaattataatctaaatctttttttcgacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTACTTCTATTTACACCTAGTGTA 230 447 26 Antisense
CTCCAATTCCCATCTGTCATGATTT 336 235 106 Antisense
GTTTGATTTAACGAGACTGATTTGT 332 451 145 Antisense
ACTGATTTGTTGCATGGTCGCCGTT 450 91 160 Antisense
GGTCGCCGTTATTTCCTTATAATGA 188 503 175 Antisense
TTATAATGAGTCAACCCCCTATCGT 31 681 191 Antisense
CGTCGTAACTTTTCGTTCTCATTAT 231 245 213 Antisense
TTCTCATTATTTCCTCAGGCATGTT 590 691 228 Antisense
TCCTCAGGCATGTTATCTCATTTTT 24 593 239 Antisense
TTGATTTCTCTTTAGACATAAGCAA 700 703 262 Antisense
ATAATCTAAATCTTTTTTTCGACAG 299 3 295 Antisense
Sequence Source Affymetrix Proprietary Database