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[175188_at]

Description AV185076_rc /REP_DB=TREMBL Accession /GB=AV185076 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk673c5 : 3prime end, single read.
Cluster 6grp_total > 61      4grp_total > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 1.3
(-3)
A 		11.9
(3)
A 		3.7
(-1.6)
A 		6
(-0.3)
A 		11
B 5.8
(-2.5)
A 		4.2
(-2.9)
A 		29
(3)
A 		3.7
(-3)
A 		25
C 3.3
(-3)
A 		6.2
(3)
A 		3.5
(-2.6)
A 		5.8
(2.2)
A 		3
avr 3.5
(-3) 		7.4
(-0.3) 		12.1
(3) 		5.2
(-1.8) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 2.9
(-2.8)
A 		2.3
(-2.9)
A 		25.3
(1)
A 		36.7
(3)
A 		5.8
(-2.3)
A 		2
(-3)
A 		35
B 2.8
(-0.2)
A 		3.1
(0.5)
A 		3.3
(0.9)
A 		1.6
(-3)
A 		4.2
(3)
A 		1.7
(-2.8)
A 		3
C 7
(-1.5)
A 		23.3
(3)
A 		3.5
(-2.4)
A 		3.8
(-2.4)
A 		3.6
(-2.4)
A 		1.5
(-3)
A 		22
avr 4.2
(-1.8) 		9.6
(0.9) 		10.7
(1.4) 		14
(3) 		4.5
(-1.6) 		1.7
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.5
(-3)
A 		2.6
(3)
A 		1
(-1.6)
A 		0.9
(-1.9)
A 		2
B 1.8
(-2)
A 		1
(-2.8)
A 		6.7
(3)
A 		0.8
(-3)
A 		6
C 1.1
(-2.3)
A 		1.8
(3)
A 		1.2
(-1.5)
A 		1
(-3)
A 		1
avr 1.1
(-2.4) 		1.8
(-0.4) 		3
(3) 		0.9
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.8
(-2.8)
A 		5.5
(0.4)
A 		9.3
(3)
A 		1.8
(-2.1)
A 		0.5
(-3)
A 		9
B 1
(-0.2)
A 		1
(-0.2)
A 		0.8
(-1.2)
A 		0.4
(-3)
A 		1.7
(3)
A 		0.6
(-2.1)
A 		1
C 2.6
(-1.1)
A 		7.1
(3)
A 		0.9
(-2.6)
A 		0.8
(-2.7)
A 		1.2
(-2.4)
A 		0.5
(-3)
A 		7
avr 1.4
(-1.2) 		3
(2) 		2.4
(0.8) 		3.5
(3) 		1.6
(-0.8) 		0.5
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175188_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21800
Sequence Type Exemplar sequence
Representative Public ID AV185076 NCBI
Target Description AV185076_rc /REP_DB=TREMBL Accession /GB=AV185076 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk673c5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075233(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075233 NCBI Caenorhabditis elegans Y51A2D.15 (Y51A2D.15) mRNA, complete cds. 11/11 A 
Y51A2D.15 ENSEMBL cdna:known chromosome:CEL140:V:18595373:18614118:1 gene:Y51A2D.15 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18613800-18614063(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51A2D.15
Entrez Gene 190137 Entrez gene
SwissProt Q9XXR1 EMBL-EBI
WormBase CE32531 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.5117.1.S1_S_AT similar to Hook-related protein 1 cfa
CANINE_2:CFAAFFX.5131.1.S1_AT similar to Hook-related protein 1 cfa
DROSOPHILA_2:1626237_AT dm
DROSGENOME1:148086_AT dm
CHICKEN:GGA.14884.1.S1_S_AT similar to hypothetical protein LOC55580 gga
CHICKEN:GGAAFFX.12589.1.S1_S_AT similar to hypothetical protein LOC55580 gga
CHICKEN:GGAAFFX.5084.2.S1_S_AT similar to hypothetical protein LOC55580 gga
Protein Similarities
Method ID Description E-Value
blast CAA16402 Hypothetical protein Y51A2D.15 [Caenorhabditis elegans] ref|NP_507634.2| Y51A2D.15 [Caenorhabditis elegans] 0.0
blast T27075 hypothetical protein Y51A2D.16 - Caenorhabditis elegans 0.0
blast CAE67413 Hypothetical protein CBG12901 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:175188_AT
ctccgttagccggtaattcgacatgttctgtgtccacgtcatcagacagtacacccgacg
agtgtcctttgcatggttcgagaagcttctcgaaaatttctgctctaaaaattcaaagtt
cgcccagtccgtcaagctcgttttcgcggtttttatcgctgcggcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCGTTAGCCGGTAATTCGACATG 533 229 77 Antisense
AGCCGGTAATTCGACATGTTCTGTG 560 81 84 Antisense
TCGACATGTTCTGTGTCCACGTCAT 478 601 94 Antisense
GTCCACGTCATCAGACAGTACACCC 435 477 108 Antisense
ACAGTACACCCGACGAGTGTCCTTT 321 107 122 Antisense
GACGAGTGTCCTTTGCATGGTTCGA 458 377 133 Antisense
CTTTGCATGGTTCGAGAAGCTTCTC 607 221 143 Antisense
GAAGCTTCTCGAAAATTTCTGCTCT 474 341 158 Antisense
CTGCTCTAAAAATTCAAAGTTCGCC 420 229 176 Antisense
TCAAGCTCGTTTTCGCGGTTTTTAT 520 629 208 Antisense
TCGCGGTTTTTATCGCTGCGGCGAA 546 597 220 Antisense
Sequence Source Affymetrix Proprietary Database