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[175187_at]

Description AU114729_rc /REP_DB=TREMBL Accession /GB=AU114729 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk727g1 : 3prime end, single read.
Cluster 6grp_total > 73      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 4.5
(-2.6)
A 		2.2
(-3)
A 		1.9
(-3)
A 		43.1
(3)
A 		41
B 21.1
(3)
A 		10.1
(-2.3)
A 		15.6
(0.3)
A 		8.7
(-3)
A 		12
C 19.7
(-1.5)
A 		25.9
(-1)
A 		2.2
(-3)
A 		73.6
(3)
A 		71
avr 15.1
(-1.6) 		12.7
(-2) 		6.6
(-3) 		41.8
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 36.6
(-2.1)
A 		23.8
(-2.9)
A 		128.1
(3)
A 		43.8
(-1.7)
A 		87.4
(0.7)
A 		21.4
(-3)
A 		107
B 34.4
(-2.6)
A 		28.9
(-3)
A 		33.3
(-2.7)
A 		112.9
(3)
A 		48.3
(-1.6)
A 		63.1
(-0.6)
A 		84
C 8.2
(-3)
A 		24
(-2.1)
A 		32.4
(-1.7)
A 		117.1
(3)
A 		47.9
(-0.8)
A 		43.1
(-1.1)
A 		109
avr 26.4
(-2.9) 		25.6
(-3) 		64.6
(0.6) 		91.3
(3) 		61.2
(0.3) 		42.5
(-1.5) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.6
(-1.9)
A 		0.5
(-3)
A 		0.5
(-3)
A 		6.3
(3)
A 		6
B 6.7
(3)
A 		2.5
(-2.3)
A 		3.6
(-0.9)
A 		1.9
(-3)
A 		5
C 6.5
(-0.1)
A 		7.5
(0.5)
A 		0.8
(-3)
A 		12.4
(3)
A 		12
avr 4.9
(0.7) 		3.5
(-0.8) 		1.6
(-3) 		6.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 6.7
(-2.6)
A 		8.5
(-2.1)
A 		27.9
(3)
A 		11.1
(-1.4)
A 		26.4
(2.6)
A 		5.2
(-3)
A 		23
B 12
(-1.9)
A 		9.6
(-2.6)
A 		8.1
(-3)
A 		29.9
(3)
A 		19.6
(0.2)
A 		23.5
(1.2)
A 		22
C 3
(-3)
A 		7.3
(-1.7)
A 		8.2
(-1.5)
A 		23.5
(3)
A 		15.5
(0.7)
A 		14.4
(0.3)
A 		21
avr 7.2
(-3) 		8.5
(-2.5) 		14.7
(0.1) 		21.5
(3) 		20.5
(2.6) 		14.4
(0) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175187_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21644
Sequence Type Exemplar sequence
Representative Public ID AU114729 NCBI
Target Description AU114729_rc /REP_DB=TREMBL Accession /GB=AU114729 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk727g1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
R08C7.9 ENSEMBL cdna:known chromosome:CEL140:IV:4437811:4439312:-1 gene:R08C7.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4437826-4438106(-) 57.5 100.0
Public Domain and Genome References
Ensembl R08C7.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO91706 Hypothetical protein R08C7.9 [Caenorhabditis elegans] ref|NP_500565.2| R08C7.9 [Caenorhabditis elegans] 0.0
blast T29660 hypothetical protein R08C7.9 - Caenorhabditis elegans 1.0E-170
blast AAO91704 Hypothetical protein R08C7.13 [Caenorhabditis elegans] ref|NP_001023331.1| R08C7.13 [Caenorhabditis elegans] 8.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.9E-5
Sequence
Target Sequence 
>C. ELEGANS:175187_AT
cgttttaatcactataattctcttatctctaccatcaatatctctatatatctcttatct
cttaaaaatatctttagcaaatatctcttagcgaagggacctgcgtctctcttcgccaca
cactctctggctgccgcggcctgccaatactttcgtgccagtaaataggcattctcatga
tctcatggttccgtaatataacttcaataacttttatccgtttctcttttctattgttcc
acatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTTTTAATCACTATAATTCTCTTA 607 247 13 Antisense
TATAATTCTCTTATCTCTACCATCA 208 661 25 Antisense
ATCTCTACCATCAATATCTCTATAT 371 33 37 Antisense
ATCTCTATATATCTCTTATCTCTTA 351 33 52 Antisense
ATCTTTAGCAAATATCTCTTAGCGA 638 31 82 Antisense
TCTTAGCGAAGGGACCTGCGTCTCT 343 613 98 Antisense
TGCCAATACTTTCGTGCCAGTAAAT 481 585 154 Antisense
AAATAGGCATTCTCATGATCTCATG 536 115 175 Antisense
CATGATCTCATGGTTCCGTAATATA 583 209 188 Antisense
TCAATAACTTTTATCCGTTTCTCTT 47 633 216 Antisense
TTCTCTTTTCTATTGTTCCACATGT 236 693 234 Antisense
Sequence Source Affymetrix Proprietary Database