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[175186_at] Human plasma-cell membrane glycoprotein PC-1 like

Description AU114825_rc /REP_DB=TREMBL Accession /GB=AU114825 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk728g9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 51      4grp_high_8_8 > 48      6grp_highest_nonorm > 90      6grp_total > 62      4grp_total > 54      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 215.7
(3)
P 		176.2
(1.4)
P 		155.3
(0.6)
P 		66
(-3)
A 		150
B 242.9
(3)
P 		102.1
(-3)
P 		115.1
(-2.4)
P 		128.9
(-1.9)
P 		141
C 284.5
(3)
P 		167.7
(-2.1)
P 		239.5
(1.1)
P 		145.8
(-3)
P 		139
avr 247.7
(3) 		148.7
(-1.4) 		170
(-0.5) 		113.6
(-3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 108.9
(-1.8)
P 		194.9
(2.3)
P 		172.3
(1.2)
P 		209.5
(3)
P 		170.9
(1.2)
P 		84.1
(-3)
P 		125
B 102.6
(-2.8)
P 		102.8
(-2.8)
P 		195
(3)
P 		136.1
(-0.7)
P 		122.8
(-1.6)
P 		100.1
(-3)
P 		95
C 193.1
(1.4)
P 		151.4
(-0.5)
P 		227.1
(3)
P 		202.6
(1.9)
P 		151.9
(-0.5)
P 		97
(-3)
P 		130
avr 134.9
(-0.6) 		149.7
(0.2) 		198.1
(3) 		182.7
(2.1) 		148.5
(0.1) 		93.7
(-3) 		104
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 78.5
(3)
P 		38.3
(-0.5)
P 		40.6
(-0.3)
P 		9.7
(-3)
A 		69
B 77.4
(3)
P 		25.2
(-3)
P 		26.7
(-2.8)
P 		27.5
(-2.7)
P 		52
C 94.2
(3)
P 		48.2
(-1)
P 		83.5
(2.1)
P 		24.6
(-3)
P 		70
avr 83.4
(3) 		37.2
(-1.4) 		50.3
(-0.2) 		20.6
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 20.1
(-3)
P 		69.3
(3)
P 		37.5
(-0.9)
P 		53.1
(1)
P 		51.6
(0.8)
P 		20.5
(-3)
P 		49
B 35.7
(-2.4)
P 		34.2
(-3)
P 		47.4
(2)
P 		36
(-2.3)
P 		49.9
(3)
P 		37.3
(-1.8)
P 		16
C 71.6
(3)
P 		46.2
(-0.9)
P 		57.8
(0.9)
P 		40.7
(-1.7)
P 		49.1
(-0.5)
P 		32.5
(-3)
P 		39
avr 42.5
(0.7) 		49.9
(2.9) 		47.6
(2.2) 		43.3
(0.9) 		50.2
(3) 		30.1
(-3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175186_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21862
Sequence Type Exemplar sequence
Representative Public ID AU114825 NCBI
Target Description AU114825_rc /REP_DB=TREMBL Accession /GB=AU114825 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk728g9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073645(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073645 NCBI Caenorhabditis elegans C27A7.3 (C27A7.3) mRNA, complete cds. 11/11 A 
SNAP00000042922 ENSEMBL cdna:SNAP chromosome:CEL140:V:12144034:12146826:1 11/11 None
GENEFINDER00000042929 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12136156:12146826:1 11/11 None
C27A7.3 ENSEMBL cdna:known chromosome:CEL140:V:12143464:12146826:1 gene:C27A7.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12146427-12146804(+) 100.0 100.0
Public Domain and Genome References
Gene Title Human plasma-cell membrane glycoprotein PC-1 like
Ensembl C27A7.3
Entrez Gene 179665 Entrez gene
SwissProt P90755 EMBL-EBI
WormBase CE27738 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9117 nucleotide metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02785 Hypothetical protein C27A7.3 [Caenorhabditis elegans] ref|NP_506046.1| C27A7.3 [Caenorhabditis elegans] 0.0
blast CAE75401 Hypothetical protein CBG23391 [Caenorhabditis briggsae] 0.0
blast CAB02784 Hypothetical protein C27A7.1 [Caenorhabditis elegans] ref|NP_506044.1| C27A7.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002591 EMBL-EBI Type I phosphodiesterase/nucleotide pyrophosphatase 1.0E-126
Pfam IPR002591 EMBL-EBI Type I phosphodiesterase/nucleotide pyrophosphatase 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR002591 EMBL-EBI Type I phosphodiesterase/nucleotide pyrophosphatase 1.0E-126
Pfam IPR002591 EMBL-EBI Type I phosphodiesterase/nucleotide pyrophosphatase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506046.1 1 24-46
C27A7.3 1 24-46
Sequence
Target Sequence 
>C. ELEGANS:175186_AT
aagagccaactcatttctaccgtattctgattacatgtaccggaaattggctgtctacaa
atccaccattatgcaaaaagtatagtgacacgaaagcactagctttcgtttttcctattt
tgaacaaaaaaacaacaatggattgtatggattctgatgccattcttcttgattacacat
caactatcgaagatgtagaaaacattgctagttttcaatttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAGCCAACTCATTTCTACCGTAT 320 153 25 Antisense
CCAACTCATTTCTACCGTATTCTGA 183 277 30 Antisense
ACCGTATTCTGATTACATGTACCGG 350 89 43 Antisense
CATGTACCGGAAATTGGCTGTCTAC 23 211 58 Antisense
ATTGGCTGTCTACAAATCCACCATT 436 3 70 Antisense
GTCTACAAATCCACCATTATGCAAA 649 469 77 Antisense
GAAAGCACTAGCTTTCGTTTTTCCT 293 359 116 Antisense
GGATTCTGATGCCATTCTTCTTGAT 374 509 173 Antisense
ATGCCATTCTTCTTGATTACACATC 527 41 181 Antisense
TCTTGATTACACATCAACTATCGAA 1 619 191 Antisense
AAAACATTGCTAGTTTTCAATTTCA 111 131 223 Antisense
Sequence Source Affymetrix Proprietary Database