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[175185_at]

Description AU113633_rc /REP_DB=TREMBL Accession /GB=AU113633 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk709h3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 22      4grp_highest_8_8 > 26      4grp_high_8_8 > 57      6grp_highest_nonorm > 23      6grp_total > 22      4grp_total > 62      6grp_highest_sub > 01_02_03      6grp_cgc > 61      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1385
1 2 3 4 range
A 3162.7
(3)
P 		2441.9
(-0.1)
P 		2671.4
(0.9)
P 		1789.5
(-3)
P 		1373
B 2369.3
(-3)
P 		2481.1
(-2.2)
P 		3174
(3)
P 		2532
(-1.8)
P 		805
C 3099.3
(3)
P 		2519.6
(-0.3)
P 		2834.6
(1.5)
P 		2036.7
(-3)
P 		1063
avr 2877.1
(2.9) 		2480.9
(-0.2) 		2893.3
(3) 		2119.4
(-3) 		774

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1465
1 2 3 4 5 6 range
A 2287.7
(-0.7)
P 		3044.9
(3)
P 		2856.6
(2.1)
P 		1879.3
(-2.7)
P 		2321.6
(-0.5)
P 		1810
(-3)
P 		1235
B 2502.2
(1.5)
P 		2598
(2.2)
P 		2707.1
(3)
P 		2368.2
(0.5)
P 		1897.9
(-3)
P 		2180.2
(-0.9)
P 		809
C 2563.4
(3)
P 		2275.6
(1.2)
P 		2394.6
(2)
P 		1864.9
(-1.3)
P 		2199
(0.8)
P 		1579.9
(-3)
P 		984
avr 2451.1
(1.5) 		2639.5
(2.9) 		2652.8
(3) 		2037.5
(-1.6) 		2139.5
(-0.9) 		1856.7
(-3) 		796
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 890
1 2 3 4 range
A 1151.5
(3)
P 		530.1
(-1.2)
P 		698.4
(-0.1)
P 		261.9
(-3)
P 		890
B 755.5
(3)
P 		612.8
(-1)
P 		735.5
(2.4)
P 		539.6
(-3)
P 		216
C 1026
(3)
P 		724.4
(0.3)
P 		987.9
(2.7)
P 		343.4
(-3)
P 		683
avr 977.7
(3) 		622.4
(-0.6) 		807.3
(1.3) 		381.6
(-3) 		596

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 708
1 2 3 4 5 6 range
A 421.7
(-3)
P 		1082.9
(3)
P 		622.1
(-1.2)
P 		476.6
(-2.5)
P 		700.6
(-0.5)
P 		440.7
(-2.8)
P 		661
B 870.6
(3)
P 		864.8
(2.9)
P 		657.4
(-2.3)
P 		627.2
(-3)
P 		771.1
(0.5)
P 		813
(1.6)
P 		243
C 950.1
(3)
P 		694.4
(0.3)
P 		609.5
(-0.6)
P 		375
(-3)
P 		711.6
(0.5)
P 		528.9
(-1.4)
P 		575
avr 747.5
(0.9) 		880.7
(3) 		629.7
(-0.9) 		492.9
(-3) 		727.8
(0.6) 		594.2
(-1.4) 		388
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175185_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21341
Sequence Type Exemplar sequence
Representative Public ID AU113633 NCBI
Target Description AU113633_rc /REP_DB=TREMBL Accession /GB=AU113633 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk709h3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171410(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171410 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-60) (tag-60) mRNA, complete cds. 11/11 None
C01F6.6a ENSEMBL cdna:known chromosome:CEL140:IV:9119079:9130362:1 gene:C01F6.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177736 2 1 NM_171410 175185_at (11), 191606_at (9)
NM_171411 187623_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9130010-9130292(+) 100.0 100.0
Public Domain and Genome References
Ensembl C01F6.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92439 Hypothetical protein C01F6.6a [Caenorhabditis elegans] emb|CAD36490.1| Hypothetical protein C01F6.6a [Caenorhabditis elegans] ref|NP_741478.1| Temporarily Assigned Gene name family member (tag-60) [Caenorhabditis elegans] 0.0
blast CAD37352 Hypothetical protein C01F6.6b [Caenorhabditis elegans] emb|CAD36491.1| Hypothetical protein C01F6.6b [Caenorhabditis elegans] ref|NP_741479.1| Temporarily Assigned Gene name family member (tag-60) [Caenorhabditis elegans] 1.0E-157
blast CAE74117 Hypothetical protein CBG21779 [Caenorhabditis briggsae] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.5E-5
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.3E-6
Sequence
Target Sequence 
>C. ELEGANS:175185_AT
aatacaacttcgaaacatgacccagttattataaaaccacatataacatttacttacttt
tttcccccaattttcatgtattttacctgtgataagtgttccaccaactagatataaaat
ttatttccttccatttcacaatcgctcaactttacatttttcagttccttctgaaattgt
ttaattttcagttatttctttcaatgtgccttctgaagtttatcaataac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATACAACTTCGAAACATGACCCAG 455 171 21 Antisense
AACCACATATAACATTTACTTACTT 376 147 55 Antisense
CCCCAATTTTCATGTATTTTACCTG 26 235 85 Antisense
GTATTTTACCTGTGATAAGTGTTCC 132 451 98 Antisense
ATAAGTGTTCCACCAACTAGATATA 317 25 112 Antisense
GATATAAAATTTATTTCCTTCCATT 34 421 131 Antisense
TCCATTTCACAATCGCTCAACTTTA 53 591 150 Antisense
ACAATCGCTCAACTTTACATTTTTC 197 115 158 Antisense
ACTTTACATTTTTCAGTTCCTTCTG 584 101 169 Antisense
AGTTATTTCTTTCAATGTGCCTTCT 188 63 210 Antisense
GTGCCTTCTGAAGTTTATCAATAAC 39 479 226 Antisense
Sequence Source Affymetrix Proprietary Database